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BaseInfo

ncRNA ID	novel_zma_miR642
Species	Zea mays
Class	miRNA
Genome position	Chr10:148323479-148323611 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089715;SRR2287160;SRR1997865;SRR1997866;SRR2089698;SRR2089708
Length	24
Mature sequence(if miRNA)	110 - ACGGGCAUGUUCGGUUACACCAAU - 133
Stem-loop(if miRNA)	-AC    A                        A         A  A          UC       A    GGGC UGUUCGGUUACACCAAUCCAGAGG GGAUUGGAG GG UUAAAUCCCC  CUAGUCA A    |||| |||||||||||||||||||||||| ||||||||| || ||||||||||  |||||||    CCCG ACAAGCCAAUGUGGUUAGGUCUCC CCUAACCUC CC AAUUUAGGGG  GAUCAGU A CAU    A                        C         C  A          CA       A
Stem-loop sequence	ACGGGCAUGUUCGGUUACACCAAUCCAGAGGAGGAUUGGAGAGGAUUAAAUCCCCUCCUAGUCAAAAAUGACUAGACGGGGAUUUAAACCCCUCCAAUCCCCCUCUGGAUUGGUGUAACCGAACAAGCCCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT041883.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGCA   1   |||||||||||||||=|||||||| targets:891   AUUGGUGUAACCGAAUAUGCCCGU   914 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGCA   1   |||||||||||||||=|||||||| targets:1190   AUUGGUGUAACCGAAUAUGCCCGU   1213 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGCA   1   |||||||||||||||=|||||||| targets:2219   AUUGGUGUAACCGAAUAUGCCCGU   2242 Target Full Sequence	1.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:24   UAACCACAUUGGCUUGUACGGGCA   1   |||||||||||||||=|||||||| targets:2220   AUUGGUGUAACCGAAUAUGCCCGU   2243 Target Full Sequence	1.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGCA   1   ||||||||||||||||||||||*| targets:550   AUUGGUGUAACCGAACAUGCCCUU   573 Target Full Sequence	1.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGCA   1   ||||||||||||||||||||||*| targets:550   AUUGGUGUAACCGAACAUGCCCUU   573 Target Full Sequence	1.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
XM_020542894.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGCA   1   ||||||||||||||||||||||** targets:22   AUUGGUGUAACCGAACAUGCCCUG   45 Target Full Sequence	2.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget