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BaseInfo

ncRNA ID	novel_zma_miR641
Species	Zea mays
Class	miRNA
Genome position	Chr9:59487470-59487550 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089715
Length	25
Mature sequence(if miRNA)	57 - AAAUCGAUUUUCACUGGCGGUCCUU - 81
Stem-loop(if miRNA)	--C        C      A              A   UAU    GACCGCCA UGAAAA CGAUUUUUACUGGC GUU   U    |||||||| |||||| |||||||||||||| |||   A    CUGGCGGU ACUUUU GCUAAAAGUGACCG CAG   U UUC        C      A              C   CCG
Stem-loop sequence	CGACCGCCACUGAAAAACGAUUUUUACUGGCAGUUUAUUAUGCCGACCGCCAGUGAAAAUCGAUUUUCACUGGCGGUCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU960305.1	ncRNA:25   UUCCUGGCGGUCACUUUUAGCUAAA   1   =|||||||||||||||||||*|||| targets:617   GAGGACCGCCAGUGAAAAUCAAUUU   641 Target Full Sequence	1.5	Zea mays clone 223391 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960305.1	ncRNA:25   UUCCUGGCGGUCACUUUUAGCUAAA   1   ||--||||||||||||||||||||| targets:663   AA--ACCGCCAGUGAAAAUCGAUUU   685 Target Full Sequence	0.0	Zea mays clone 223391 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150001.1	ncRNA:25   UUCCUGGCGGUCACUUUUAGCUAAA   1   =|||||||||||||||||||*|||| targets:617   GAGGACCGCCAGUGAAAAUCAAUUU   641 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA	NA	coding protein	psRNATarget
NM_001150001.1	ncRNA:25   UUCCUGGCGGUCACUUUUAGCUAAA   1   ||--||||||||||||||||||||| targets:663   AA--ACCGCCAGUGAAAAUCGAUUU   685 Target Full Sequence	0.0	Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA	NA	coding protein	psRNATarget
EU944461.1	ncRNA:25   UUCCUGGCGGUCACUUUUAGCUAAA   1   |||-||||||||||||||||||||| targets:859   AAG-ACCGCCAGUGAAAAUCGAUUU   882 Target Full Sequence	0.0	Zea mays clone 219441 mRNA sequence	NA	coding protein	psRNATarget