Search result

BaseInfo

ncRNA ID	novel_zma_miR640
Species	Zea mays
Class	miRNA
Genome position	Chr9:57079671-57079750 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	57 - UCUUCCCUGGAGCACCGGACAGUC - 80
Stem-loop(if miRNA)	-CA         AAU     --C     A     CC   G  G    UGUCUGGUG   UUUAG   GGAGC GAUUC  GAA CU G    |||||||||   |||||   ||||| |||||  ||| ||    ACAGGCCAC   AGGUC   UCUCG CUGAG  CUU GA C CUG         --G     CCU     -     -A   -  G
Stem-loop sequence	CAUGUCUGGUGAAUUUUAGCGGAGCAGAUUCCCGAAGCUGGCGAGUUCAGAGUCGCUCUUCCCUGGAGCACCGGACAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410010.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   |||--||||||||||*|||||||||| targets:32   GACAGUGUCCGGUGCCCCAGGGAAGA   57 Target Full Sequence	1.5	Sequence 8135 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242140.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   |||--||||||||||*|||||||||| targets:32   GACAGUGUCCGGUGCCCCAGGGAAGA   57 Target Full Sequence	1.5	Sequence 8135 from Patent EP2985353	NA	coding protein	psRNATarget
JB170471.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   |||--||||||||||*|||||||||| targets:32   GACAGUGUCCGGUGCCCCAGGGAAGA   57 Target Full Sequence	1.5	Sequence 8135 from Patent EP2559767	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   |||--||||||||||||||*|||||| targets:625   GACAGUGUCCGGUGCUCCAAGGAAGA   650 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   |||--||||||||||||||*|||||| targets:625   GACAGUGUCCGGUGCUCCAAGGAAGA   650 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
HI409700.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   ||=--||||||||||||||*|||||| targets:94   GAUAGUGUCCGGUGCUCCAAGGAAGA   119 Target Full Sequence	1.5	Sequence 7825 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241830.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   ||=--||||||||||||||*|||||| targets:94   GAUAGUGUCCGGUGCUCCAAGGAAGA   119 Target Full Sequence	1.5	Sequence 7825 from Patent EP2985353	NA	coding protein	psRNATarget
JB170161.1	ncRNA:24   CUG--ACAGGCCACGAGGUCCCUUCU   1   ||=--||||||||||||||*|||||| targets:94   GAUAGUGUCCGGUGCUCCAAGGAAGA   119 Target Full Sequence	1.5	Sequence 7825 from Patent EP2559767	NA	coding protein	psRNATarget