| ncRNA ID | osa-miR2871b |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:8340799-8340939 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 106 - UAUUUUAGUUUCUAUGGUCAC - 126 |
| Stem-loop(if miRNA) |
C C AAA AUA UCAAGUGACUUUGUUC AUGGCUGCC ACCAUGGUGACCGUAGAAACUAA AUAGAA GAGGUAG UC A ||||||||| ||||||||||||||||||||||| |||||| ||||||| || U UACCGACGG UGGUAUCACUGGUAUCUUUGAUU UAUCUU UUCCAUC GA U - U --- AAU ACAGAUAAGGUUGCAU |
| Stem-loop sequence | AUGGCUGCCCACCAUGGUGACCGUAGAAACUAACAUAGAAAAAGAGGUAGAUAUCUCAAGUGACUUUGUUCAUUUACGUUGGAAUAGACAAGUAACUACCUUUUCUAUUUUAGUUUCUAUGGUCACUAUGGUGGCAGCCAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HI403892.1 |
|
2.5 | Sequence 2017 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
| JB164353.1 |
|
2.5 | Sequence 2017 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
| LQ236022.1 |
|
2.5 | Sequence 2017 from Patent EP2985353 | NA | coding protein | psRNATarget |
| 1 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |
| 2 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |