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BaseInfo

ncRNA ID	osa-miR530-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:8303538-8303694 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	9 - AGGUGCAGAGGCAGAUGCAAC - 29
Stem-loop(if miRNA)	G  C         AC         CA  -G       U  -----A   GCAAGCUAGCAAUACGUGCUUGAUCG GUGAUA AG UGCAUUUGC  CUGCACCUA  GA  AGGAAGA GA      GCA                          C |||||| || |||||||||  |||||||||  ||  ||||||| ||      ||| UACUGU UC ACGUAGACG  GACGUGGAU  CU  UCCUUCU CU      UGU                          U       A  A         GA         CC  AG       -  GGUCCU   UGUAACACACGUUCUUCGAUCGCAUA
Stem-loop sequence	GUGAUAGAGCUGCAUUUGCACCUGCACCUACAGAGAGGAAGAUGAAGCAGCAAGCUAGCAAUACGUGCUUGAUCGCUAUACGCUAGCUUCUUGCACACAAUGUUGUUCCUGGUCUCUUCCUGAUCCCUAGGUGCAGAGGCAGAUGCAACUAUGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015765264.1	ncRNA:21   CAACGUAGACGGAGACGUGGA   1   |*||||*||||||||||=||| targets:150   GCUGCAGCUGCCUCUGCGCCU   170 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351556 (LOC4351556), mRNA	uncharacterized LOC4351556(LOC4351556)	coding protein	psRNATarget

Reference

1	PMID:16126864 "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"; Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X; Plant Physiol. 139:296-305(2005).
2	PMID:18363789 "Stress-responsive microRNAs in Populus"; Lu S, Sun YH, Chiang VL; Plant J. 55:131-151(2008).