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BaseInfo

ncRNA ID	novel_zma_miR625
Species	Zea mays
Class	miRNA
Genome position	Chr1:211918864-211918932 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	46 - AGAGCAACUCCAAGAGACUAGGUA - 69
Stem-loop(if miRNA)	--A             AA       AGCCCA     C    CUAGUCUUUUGGA  UGCUCUA      GGGCU C    |||||||||||||  |||||||      ||||| A    GAUCAGAGAACCU  ACGAGAU      UCCGA A AUG             CA       ------     U
Stem-loop sequence	ACUAGUCUUUUGGAAAUGCUCUAAGCCCAGGGCUCCAAUAGCCUUAGAGCAACUCCAAGAGACUAGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU972497.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||*||||||||||||||||||||| targets:3   UAGCUAGUCUCUUGGAGUUGCUCU   26 Target Full Sequence	0.0	Zea mays clone 382264 mRNA sequence	NA	coding protein	psRNATarget
AY109644.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||*||||||||||||||*|||||| targets:270   UAGCUAGUCUCUUGGAGAUGCUCU   293 Target Full Sequence	1.5	Zea mays CL12102_-1 mRNA sequence	NA	coding protein	psRNATarget
NM_001350271.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||*||||||||||||||*|||||| targets:1511   UAACUAGUCUCUUGGAGGUGCUCU   1534 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278902 (LOC100278902), mRNA	NA	coding protein	psRNATarget
EZ059484.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||=|||||||*||||||*|||||| targets:127   UAUCUAGUCUAUUGGAGAUGCUCU   150 Target Full Sequence	2.5	TSA: Zea mays contig60606, mRNA sequence	NA	coding protein	psRNATarget
EU949437.1	ncRNA:24   AUGGAUCA---GAGAACCUCAACGAGA   1   |*|=||||---|||||||||||||||| targets:124   UUCUUAGUGGUCUCUUGGAGUUGCUCU   150 Target Full Sequence	3.0	Zea mays clone 407756 mRNA sequence	NA	coding protein	psRNATarget
BT061892.2	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||*||||*||=||||||||||||| targets:697   UAGCUAGCCUUUUGGAGUUGCUCU   720 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0194O04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548239.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||=|||||||*||||||*|||||| targets:1009   UAUCUAGUCUAUUGGAGAUGCUCU   1032 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943983 (LOC109943983), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT064756.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||=|||||||*||||||*|||||| targets:1225   UAUCUAGUCUAUUGGAGAUGCUCU   1248 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115F19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545855.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   |=*|||*||||||||||||||||| targets:2939   UGGCUAAUCUCUUGGAGUUGCUCU   2962 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109939298 (LOC109939298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545856.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   |=*|||*||||||||||||||||| targets:4081   UGGCUAAUCUCUUGGAGUUGCUCU   4104 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109939298 (LOC109939298), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664639.2	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   |=*|||*||||||||||||||||| targets:4576   UGGCUAAUCUCUUGGAGUUGCUCU   4599 Target Full Sequence	1.0	PREDICTED: Zea mays protein ALP1-like (LOC103641285), mRNA	NA	coding protein	psRNATarget
EU971083.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||*|||*|=||||||||||||||* targets:122   UAGCUAAUUUCUUGGAGUUGCUCG   145 Target Full Sequence	3.0	Zea mays clone 357079 mRNA sequence	NA	coding protein	psRNATarget
XM_008669097.2	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   |||**|||*|||*||||||||||| targets:4   UACACAGUGUCUCGGAGUUGCUCU   27 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216596), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547461.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   |||**|||*|||*||||||||||| targets:4   UACACAGUGUCUCGGAGUUGCUCU   27 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216596), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001148199.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||*|||**||*||||||||||||| targets:1051   UAGCUAUGCUGUUGGAGUUGCUCU   1074 Target Full Sequence	3.0	Zea mays putative transcriptional regulatory protein (LOC100273797), mRNA	NA	coding protein	psRNATarget
BT041826.1	ncRNA:24   AUGGAUCAGAGAACCUCAACGAGA   1   ||*|||**||*||||||||||||| targets:1051   UAGCUAUGCUGUUGGAGUUGCUCU   1074 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0063E05 mRNA, complete cds	NA	coding protein	psRNATarget