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BaseInfo

ncRNA ID	osa-miR530-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:8303538-8303694 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	128 - UGCAUUUGCACCUGCACCUA - 147
Stem-loop(if miRNA)	G  C         AC         CA  -G       U  -----A   GCAAGCUAGCAAUACGUGCUUGAUCG GUGAUA AG UGCAUUUGC  CUGCACCUA  GA  AGGAAGA GA      GCA                          C |||||| || |||||||||  |||||||||  ||  ||||||| ||      ||| UACUGU UC ACGUAGACG  GACGUGGAU  CU  UCCUUCU CU      UGU                          U       A  A         GA         CC  AG       -  GGUCCU   UGUAACACACGUUCUUCGAUCGCAUA
Stem-loop sequence	GUGAUAGAGCUGCAUUUGCACCUGCACCUACAGAGAGGAAGAUGAAGCAGCAAGCUAGCAAUACGUGCUUGAUCGCUAUACGCUAGCUUCUUGCACACAAUGUUGUUCCUGGUCUCUUCCUGAUCCCUAGGUGCAGAGGCAGAUGCAACUAUGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764872.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *|||||||||||=||||||| targets:424   GAGGUGCAGGUGUAAAUGCA   443 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327159 (LOC4327159), transcript variant X1, mRNA	uncharacterized LOC4327159(LOC4327159)	coding protein	psRNATarget
AK288466.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *|||||||||||=||||||| targets:2052   GAGGUGCAGGUGUAAAUGCA   2071 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036M20, full insert sequence	NA	coding protein	psRNATarget
XM_015767078.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *=|||||||||||||=|||| targets:1198   CGGGUGCAGGUGCAAGUGCA   1217 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL74-like (LOC107279888), mRNA	RING-H2 finger protein ATL74-like(LOC107279888)	coding protein	psRNATarget
AY224566.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *||||||||*|||||||||* targets:746   GAGGUGCAGCUGCAAAUGCU   765 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) isolate 29941 putative myosin heavy chain mRNA, partial cds	NA	coding protein	psRNATarget
AK066694.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *||||||||*|||||||||* targets:904   GAGGUGCAGCUGCAAAUGCU   923 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013074D12, full insert sequence	NA	coding protein	psRNATarget
XM_015763862.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *||||||||*|||||||||* targets:936   GAGGUGCAGCUGCAAAUGCU   955 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group microtubule-associated protein 70-1 (LOC4352926), mRNA	microtubule-associated protein 70-1(LOC4352926)	coding protein	psRNATarget
AK072200.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *||*||*||||||||||||| targets:655   CAGAUGAAGGUGCAAAUGCA   674 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013160D07, full insert sequence	NA	coding protein	psRNATarget
AK100301.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *||*||*||||||||||||| targets:655   CAGAUGAAGGUGCAAAUGCA   674 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023077P18, full insert sequence	NA	coding protein	psRNATarget
XM_015780357.1	ncRNA:20   AUCCACGUCCACGUUUACGU   1   *||*||*||||||||||||| targets:690   CAGAUGAAGGUGCAAAUGCA   709 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase MBR1 (LOC4336897), mRNA	E3 ubiquitin-protein ligase MBR1(LOC4336897)	coding protein	psRNATarget

Reference

1	PMID:16126864 "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"; Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X; Plant Physiol. 139:296-305(2005).
2	PMID:18363789 "Stress-responsive microRNAs in Populus"; Lu S, Sun YH, Chiang VL; Plant J. 55:131-151(2008).