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BaseInfo

ncRNA ID	novel_zma_miR618
Species	Zea mays
Class	miRNA
Genome position	Chr9:97601884-97601969 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2287031;SRR2287159;SRR2287164;SRR2287165;SRR1997865;SRR5451005;SRR2089699;SRR2089700;SRR2089702;SRR2089703;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	66 - UCGAAGGGGAUUGGAGAGGUU - 86
Stem-loop(if miRNA)	--   A            A     G     G           A   UCG AGGGGAUUGGAG GGUUA AAUCC CUUCUUAUUCA A   ||| |||||||||||| ||||| ||||| |||||||||||   GGU UCCCCUAACCUC CCGAU UUAGG GAAGAAUGAGU A UU   C            C     G     G           U
Stem-loop sequence	UCGAAGGGGAUUGGAGAGGUUAGAAUCCGCUUCUUAUUCAAAAUUGAGUAAGAAGGGGAUUGUAGCCCCUCCAAUCCCCUCUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238074.1	ncRNA:21   UUGGAG-AGGUUAGGGGAAGCU   1   ||=|||-||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCGA   110 Target Full Sequence	3.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   UUGGAG-AGGUUAGGGGAAGCU   1   ||=|||-||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCGA   110 Target Full Sequence	3.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   UUGGAG-AGGUUAGGGGAAGCU   1   ||=|||-||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCGA   110 Target Full Sequence	3.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   UUGGAG-AGGUUAGGGGAAGCU   1   ||=|||-||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCGA   110 Target Full Sequence	3.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   UUGGAG-AGGUUAGGGGAAGCU   1   ||=|||-||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCGA   110 Target Full Sequence	3.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   UUGGAG-AGGUUAGGGGAAGCU   1   ||=|||-||||||||||||||| targets:89   AAUCUCCUCCAAUCCCCUUCGA   110 Target Full Sequence	3.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
EU966177.1	ncRNA:21   UUGGAG---AGGUUAGGGGAAGCU   1   =*||||---||||||||||||||| targets:347   GUCCUCCAAUCCAAUCCCCUUCGA   370 Target Full Sequence	3.0	Zea mays clone 292300 mRNA sequence	NA	coding protein	psRNATarget
XM_008652872.2	ncRNA:21   UUGGAG---AGGUUAGGGGAAGCU   1   =*||||---||||||||||||||| targets:377   GUCCUCCAAUCCAAUCCCCUUCGA   400 Target Full Sequence	3.0	PREDICTED: Zea mays putative protein kinase superfamily protein (LOC100273536), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU948805.1	ncRNA:21   UUGGAGAGGUUAGGGGAAGCU   1   |=|||||**|||||||||||| targets:113   AGCCUCUGAAAUCCCCUUCGA   133 Target Full Sequence	2.5	Zea mays clone 385713 mRNA sequence	NA	coding protein	psRNATarget
BT017268.1	ncRNA:21   UUGGAGAGGUUAGGGGAAGCU   1   |*||*|||||||||||||=|| targets:912   AUCCCCUCCAAUCCCCUUUGA   932 Target Full Sequence	2.5	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
EU975785.1	ncRNA:21   UUGGAGAGGUUAGGGGAAGCU   1   |=|||||**|||||||||||| targets:113   AGCCUCUGAAAUCCCCUUCGA   133 Target Full Sequence	2.5	Zea mays clone 500780 3-oxoacyl-reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001159027.1	ncRNA:21   UUGGAGAGGUUAGGGGAAGCU   1   |=|||||**|||||||||||| targets:113   AGCCUCUGAAAUCCCCUUCGA   133 Target Full Sequence	2.5	Zea mays uncharacterized LOC100286139 (si606063d04), mRNA	NA	coding protein	psRNATarget