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BaseInfo

ncRNA ID	novel_zma_miR611
Species	Zea mays
Class	miRNA
Genome position	Chr9:130704049-130704139 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089715
Length	21
Mature sequence(if miRNA)	71 - GUGGAUUAAGGGGGAUUGGAG - 91
Stem-loop(if miRNA)	- UG    A          GA      A       C C      A  G  GAUU AGGGGGAUUG  GGGAUU AAUCCCU C UGUUCA A  |  |||| ||||||||||  |||||| ||||||| | ||||||  C  CUAA UUCUCUUAAC  CCCUAA UUAGGGA G AUAAGU A C CU    C          UC      G       A A      U
Stem-loop sequence	GUGGAUUAAGGGGGAUUGGAGGGAUUAAAUCCCUCCCUGUUCAAAAUUGAAUAAGAAGGGAUUGAAUCCCCUCAAUUCUCUUCAAUCUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552749.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   |||||||||||||*||||||| targets:3277   CUCCAAUCCCCCUCAAUCCAC   3297 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   |||||||||||||*||||||| targets:1598   CUCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   |||||||||||||*||||||| targets:1598   CUCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
JB163480.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   *|||||||||*|||||||||| targets:99   AUCCAAUCCCACUUAAUCCAC   119 Target Full Sequence	1.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
HI403019.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   *|||||||||*|||||||||| targets:99   AUCCAAUCCCACUUAAUCCAC   119 Target Full Sequence	1.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   *|||||||||*|||||||||| targets:99   AUCCAAUCCCACUUAAUCCAC   119 Target Full Sequence	1.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   *|||||||||*|||||||||| targets:7146   AUCCAAUCCCACUUAAUCCAC   7166 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   *|||||||||*|||||||||| targets:7250   AUCCAAUCCCACUUAAUCCAC   7270 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   *|||||||||*|||||||||| targets:7261   AUCCAAUCCCACUUAAUCCAC   7281 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ107914.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   =*|||||||||*||||||||= targets:145   UCCCAAUCCCCAUUAAUCCAU   165 Target Full Sequence	2.5	TSA: Zea mays contig43572, mRNA sequence	NA	coding protein	psRNATarget
BT033751.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   =*|||||||||*||||||||= targets:654   UCCCAAUCCCCAUUAAUCCAU   674 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165E13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137038.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   =*|||||||||*||||||||= targets:654   UCCCAAUCCCCAUUAAUCCAU   674 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191609 (LOC100191609), mRNA	NA	coding protein	psRNATarget
EU968657.1	ncRNA:21   GAGGUUAGGGGGAAUUAGGUG   1   =*|||||||||*||||||||= targets:727   UCCCAAUCCCCAUUAAUCCAU   747 Target Full Sequence	2.5	Zea mays clone 323128 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget