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BaseInfo

ncRNA ID	novel_zma_miR609
Species	Zea mays
Class	miRNA
Genome position	Chr9:131692703-131692813 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089698;SRR2089703
Length	21
Mature sequence(if miRNA)	1 - AAAUGGAAUAAAGUAGAGGGA - 21
Stem-loop(if miRNA)	--    C                  C C      AC       A          C   CCUC AUUUUAUUCCAUUUUAGU C UAAAUU  UAAAUAU GAAACUAAAA U   |||| |||||||||||||||||| | ||||||  ||||||| |||||||||| C   GGAG UGAAAUAAGGUAAAAUUA G AUUUAA  AUUUAUA CUUUGAUUUU U AG    A                  A U      CA       C          A
Stem-loop sequence	CCUCCAUUUUAUUCCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCAUAUUUAACAAUUUAUGAAUUAAAAUGGAAUAAAGUAGAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|=|||||||||||| targets:296   UCCCUCCAUUUUAUUCCAUUU   316 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU967664.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||=|||*|||||||||||||| targets:1128   UCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.0	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||=|||*|||||||||||||| targets:1128   UCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.0	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|=|||||||||||| targets:171   UCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|=|||||||||||| targets:171   UCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|=|||||||||||| targets:171   UCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB166880.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|=|||||||||||| targets:80   UCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|=|||||||||||| targets:80   UCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|=|||||||||||| targets:80   UCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008662937.2	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   |=|||=||*|||||||||||| targets:2475   UUCCUUUAAUUUAUUCCAUUU   2495 Target Full Sequence	2.5	PREDICTED: Zea mays probable galacturonosyltransferase 13 (LOC103640332), mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   ||||||*|*|||||||||||| targets:145   UCCCUCCAAUUUAUUCCAUUU   165 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   |||||**|||||||||||||| targets:31   UCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   |||||**|||||||||||||| targets:31   UCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
JB163455.1	ncRNA:21   AGGGAGAUGAAAUAAGGUAAA   1   |||||**|||||||||||||| targets:31   UCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget