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BaseInfo

ncRNA ID novel_zma_miR605
Species Zea mays
Class miRNA
Genome position Chr9:154454149-154454229 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - ACGGGUAUGGGUUUUUUAGCGGGC - 24
Stem-loop(if miRNA) --        -U     AA     -C           -   G
  CCGUUGGG  ACCCG  ACCCG  AUGGGUAUGGG UUU G
  ||||||||  |||||  |||||  ||||||||||| ||| G
  GGCGAUUU  UGGGU  UGGGC  UGCCCAUAUUU AAA C
CG        UU     -A     AC           U   A
Stem-loop sequence CCGUUGGGUACCCGAAACCCGCAUGGGUAUGGGUUUGGGCAAAAUUUUAUACCCGUCACGGGUAUGGGUUUUUUAGCGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT042623.2
ncRNA:24   CGGGCGAUUUUUUGGGUAUGGGCA   1
  *|||*=||||||||||=|||||||
targets:322   ACCCAUUAAAAAACCCGUACCCGU   345

2.5 Zea mays full-length cDNA clone ZM_BFb0377K06 mRNA, complete cds NA coding protein psRNATarget
HI405972.1
ncRNA:24   CGGGCGAUUUUUUGGGUAUGGGCA   1
  ||||*=||||||||||||||||*|
targets:43   GCCCAUUAAAAAACCCAUACCCAU   66

2.5 Sequence 4097 from Patent EP2074227 NA coding protein psRNATarget
LQ238102.1
ncRNA:24   CGGGCGAUUUUUUGGGUAUGGGCA   1
  ||||*=||||||||||||||||*|
targets:43   GCCCAUUAAAAAACCCAUACCCAU   66

2.5 Sequence 4097 from Patent EP2985353 NA coding protein psRNATarget
JB166433.1
ncRNA:24   CGGGCGAUUUUUUGGGUAUGGGCA   1
  ||||*=||||||||||||||||*|
targets:43   GCCCAUUAAAAAACCCAUACCCAU   66

2.5 Sequence 4097 from Patent EP2559767 NA coding protein psRNATarget