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BaseInfo

ncRNA ID novel_zma_miR591
Species Zea mays
Class miRNA
Genome position Chr8:124833706-124833764 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089712;SRR2089714;SRR4237221;SRR4237223;SRR4237224;SRR4237226;SRR4237227;SRR5100255;SRR2089706
Length 24
Mature sequence(if miRNA) 36 - AAAGGAACUAGAACGGAAUGGCUC - 59
Stem-loop(if miRNA) --A         C C     UG    UGU
   CCGUUCUGU C AGUUU  UUGU   U
   ||||||||| | |||||  ||||   U
   GGUAAGGCA G UCAAG  AACA   G
CUC         A A     GA    UUG
Stem-loop sequence ACCGUUCUGUCCCAGUUUUGUUGUUGUUUGGUUACAAAGGAACUAGAACGGAAUGGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546669.1
ncRNA:24   CUCGGUAAGGCAAGAUCAAGGAAA   1
  |||=||||=|||||||||||||||
targets:28   GAGUCAUUUCGUUCUAGUUCCUUU   51

1.0 PREDICTED: Zea mays hypothetical protein (LOC103643194), transcript variant X1, mRNA NA coding protein psRNATarget
LQ241816.1
ncRNA:24   CUCGGUAAGGCAAGAUCAAGGAAA   1
  ||||||*||||||||||||*||||
targets:108   GAGCCACUCCGUUCUAGUUACUUU   131

2.5 Sequence 7811 from Patent EP2985353 NA coding protein psRNATarget
JB170147.1
ncRNA:24   CUCGGUAAGGCAAGAUCAAGGAAA   1
  ||||||*||||||||||||*||||
targets:108   GAGCCACUCCGUUCUAGUUACUUU   131

2.5 Sequence 7811 from Patent EP2559767 NA coding protein psRNATarget
HI409686.1
ncRNA:24   CUCGGUAAGGCAAGAUCAAGGAAA   1
  ||||||*||||||||||||*||||
targets:108   GAGCCACUCCGUUCUAGUUACUUU   131

2.5 Sequence 7811 from Patent EP2074227 NA coding protein psRNATarget