| ncRNA ID | osa-miR5337a |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:5621964-5622201 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - AAAUUACUUGUCGUUCUAGCU - 31 |
| Stem-loop(if miRNA) |
C UCAU U GUC ---- A A CU A CAUC UUUUUU GAUUCACUGA CU UUCAAAU ACUU GUUCUAGCUUUGUCCU UAA CAUGUAUAUCUUUGACCAUCAAUUUUUA AAA C UAUGGUUUAA AUAUGA UUUA C || ||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||| ||| | |||||||||| |||||| |||| GA GAGUUUA UGAA CAAGAUCGAAACAGGA GUU GUACAUAUAGAAACUGGUAGUUAAAAAU UUU G AUAUCAAGUU UAUACU AAAU A A UCAU - AAA UUCA C C AG C ---U CAACAU AAUUUCAUAA |
| Stem-loop sequence | CCUUCAUUUCAAAUUACUUGUCGUUCUAGCUUUGUCCUUAAACAUGUAUAUCUUUGACCAUCAAUUUUUAAAAACUCAUAUGGUUUAACAUCAUAUGAUUUUUUUUUAGAUUCACUGACAAAUACUUUAAUAAAUACAACUCAUAUUUUGAACUAUACGGAUUUCUAAAAAUUGAUGGUCAAAGAUAUACAUGCUUGACUUAGGACAAAGCUAGAACAAAAAGUAUUUGAGUACUAGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015777668.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group nephrocystin-3 (LOC4331630), transcript variant X8, mRNA | nephrocystin-3(LOC4331630) | coding protein | psRNATarget | |||||||||
| AK121051.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J023055G22, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK065527.1 |
|
1.0 | Oryza sativa Japonica Group cDNA clone:J013032P14, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21791435
"Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)"; Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q; J Exp Bot. 62:4943-4954(2011). |