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BaseInfo

ncRNA ID novel_zma_miR583
Species Zea mays
Class miRNA
Genome position Chr1:197545804-197545849 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089699;SRR2089706
Length 22
Mature sequence(if miRNA) 25 - UGGCAGGAGGUAGGUAGCUUAU - 46
Stem-loop(if miRNA) --C           -   GU   A
   AGUUGCUUGCC CCU  GCC A
   ||||||||||| |||  ||| A
   UCGAUGGAUGG GGA  CGG C
UAU           A   --   U
Stem-loop sequence CAGUUGCUUGCCCCUGUGCCAAACUGGCAGGAGGUAGGUAGCUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT085563.2
ncRNA:22   UAUUCGAUGGAUGGAGGACGGU   1
  ||||||||||||||||||||||
targets:473   AUAAGCUACCUACCUCCUGCCA   494

0.0 Zea mays full-length cDNA clone ZM_BFc0034D18 mRNA, complete cds NA coding protein psRNATarget
EU947918.1
ncRNA:22   UAUUCGAUGGAUGGAGGACGGU   1
  ||||||||||||||||||||||
targets:1007   AUAAGCUACCUACCUCCUGCCA   1028

0.0 Zea mays clone 366228 mRNA sequence NA coding protein psRNATarget