| ncRNA ID | osa-miR5533 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:2761607-2761882 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 243 - CUUUGCCAGAAGCCCUCAUGG - 263 |
| Stem-loop(if miRNA) |
C C UUAUAGCU -U AUUC GAUAAGGAUGCUUGGCGUAUCCC UCCCUGACUCCUCUUUGCCAGAAGCC UCAUGGCAGCUGUUGAGAGAGGUGCUCAUGCACCUCAGAUGGGGAUACGCCAAGCAUCCUUAUU GCCA AGCA CCU C |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| A AGGGACUGAGGAGAAACGGUCUUCGG AGUACCGUUGACAACUCUCUCCACGAGUACGUGGAGUCUACCCCUAUGCGGUUCGUAGGAAUAG ACGA CCGU CGA U - A -UCCCUUA UA ---- UAUUUAAAAUAUCGACGGUCGUC |
| Stem-loop sequence | CUCCCUGACUCCUCUUUGCCAGAAGCCCUCAUGGCAGCUGUUGAGAGAGGUGCUCAUGCACCUCAGAUGGGGAUACGCCAAGCAUCCUUAUUUUAUAGCUGCCAUAGCAAUUCCCUGAUAAGGAUGCUUGGCGUAUCCCCAUCUGCUGGCAGCUAUAAAAUUUAUAGCUGCCAUAGCAAUUCCCUGAUAAGGAUGCUUGGCGUAUCCCCAUCUGAGGUGCAUGAGCACCUCUCUCAACAGUUGCCAUGAAGGCUUCUGGCAAAGAGGAGUCAGGGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AB066661.2 |
|
2.5 | Oryza sativa Japonica Group OsRFC4 mRNA for replication factor C 40kDa subunit, complete cds | NA | coding protein | psRNATarget | |||||||||
| XM_015781662.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group replication factor C subunit 4 (LOC4336704), mRNA | replication factor C subunit 4(LOC4336704) | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |