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BaseInfo

ncRNA ID	novel_zma_miR579
Species	Zea mays
Class	miRNA
Genome position	Chr8:79521603-79521686 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	61 - GGCCUGGCACACCGGACUGUUCGG - 84
Stem-loop(if miRNA)	--    U        G   A  -A UG   -A  AG     AAA   GGAC GUCCGGUG UGC CA  U  GAU  AG  UUGGC   A   |||| |||||||| ||| ||  |  |||  ||  |||||   CUUG CAGGCCAC ACG GU  G  CUA  UC  AACCG   U GG    U        -   -  CC GU   GA  AA     ACU
Stem-loop sequence	GGACUGUCCGGUGGUGCACAAUUGGAUAAGAGUUGGCAAAAUUCAGCCAAAACUAGAUCUGGCCUGGCACACCGGACUGUUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT066013.2	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||||| targets:788   CCGGACAGUCCGGUGUGCCAGGCC   811 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||||| targets:788   CCGGACAGUCCGGUGUGCCAGGCC   811 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=||||||||||||||||*||| targets:860   CCGGACAGUCCGGUGUGCCAAGCC   883 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
HI409909.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:42   CCGGACAGUCCGGUGUGCCAGACU   65 Target Full Sequence	2.5	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
JB170370.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:42   CCGGACAGUCCGGUGUGCCAGACU   65 Target Full Sequence	2.5	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:42   CCGGACAGUCCGGUGUGCCAGACU   65 Target Full Sequence	2.5	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
HI409038.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
JB170644.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
JB169499.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
HI410183.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
JB169399.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
HI408938.1	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||||||*|= targets:40   CCGGACAGUCCGGUGUGCCAGACU   63 Target Full Sequence	2.5	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   GGCUUGUCAGGCCACACGGUCCGG   1   |||=|||||||||||||*|||||= targets:838   CCGGACAGUCCGGUGUGGCAGGCU   861 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget