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BaseInfo

ncRNA ID	novel_zma_miR578
Species	Zea mays
Class	miRNA
Genome position	Chr8:6899366-6899483 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2287162;SRR5451004;SRR5451006;SRR2089698
Length	24
Mature sequence(if miRNA)	1 - UUUGGCAAAAUAGAGACUAAACGG - 24
Stem-loop(if miRNA)	--     C   A           CG      AAAAU  A         --G   G U  G   UUUGG AAA UAGAGACUAAA  GGACUA     UA GGAUUAAGA   AGU U UG U   ||||| ||| |||||||||||  ||||||     || |||||||||   ||| | ||   AAACC UUU AUCUCUGAUUU  CCUGAU     AU CCUGAUUUU   UCG G AC U AC     A   A           UA      GUAAU  C         UAA   G U  A
Stem-loop sequence	UUUGGCAAAAUAGAGACUAAACGGGACUAAAAAUUAAGGAUUAAGAGAGUGUUUGGUUACAUGGGCUAAUUUUUAGUCCCUAUAAUGUAGUCCAUUUUAGUCUCUAAUUUACCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008682726.2	ncRNA:24   GGCAAAUCAGAGAUAAAACGGUUU   1   ==|||||||||||*|||||||||| targets:682   UUGUUUAGUCUCUUUUUUGCCAAA   705 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191216 (IDP141), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054219.1	ncRNA:24   GGCAAAUCAGAGAUAAAACGGUUU   1   ==|||||||||||*|||||||||| targets:146   UUGUUUAGUCUCUUUUUUGCCAAA   169 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176L07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660094.2	ncRNA:24   GGCAAAUCAGAGAUAAAACGGUUU   1   ||*|||||||*||*|||||||||| targets:704   CCAUUUAGUCCCUUUUUUGCCAAA   727 Target Full Sequence	2.5	PREDICTED: Zea mays MYB-related transcription factor (MYBR72), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001148657.1	ncRNA:24   GGCAAAUCAGAGAUAAAACGGUUU   1   ||*|||||||*||*|||||||||| targets:701   CCAUUUAGUCCCUUUUUUGCCAAA   724 Target Full Sequence	2.5	Zea mays MYB-related transcription factor (MYBR72), mRNA	NA	coding protein	psRNATarget
BT042708.1	ncRNA:24   GGCAAAUCAGAGAUAAAACGGUUU   1   ||*|||||||*||*|||||||||| targets:701   CCAUUUAGUCCCUUUUUUGCCAAA   724 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0017B12 mRNA, complete cds	NA	coding protein	psRNATarget
EU948299.1	ncRNA:24   GGCAAAUCAGAGAUAAAACGGUUU   1   ||*|||||||*||*|||||||||| targets:627   CCAUUUAGUCCCUUUUUUGCCAAA   650 Target Full Sequence	2.5	Zea mays clone 372547 mRNA sequence	NA	coding protein	psRNATarget