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BaseInfo

ncRNA ID novel_zma_miR575
Species Zea mays
Class miRNA
Genome position Chr8:67909780-67909843 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287160;SRR2287161;SRR2287164;SRR2287165;SRR5451003;SRR5451004;SRR5451005;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length 22
Mature sequence(if miRNA) 1 - UGGGUCAAGAAAGUAGAUGAAG - 22
Stem-loop(if miRNA) --     C      G  G    AGCCGAU     U
  UGGGU AAGAAA UA AUGA       GGGUA G
  ||||| |||||| || ||||       |||||
  ACCUA UUCUUU AU UACU       CCCAU A
GG     C      -  G    -----GU     U
Stem-loop sequence UGGGUCAAGAAAGUAGAUGAAGCCGAUGGGUAUGAUUACCCUGUCAUGUAUUUCUUCAUCCAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008683220.2
ncRNA:22   GAAG-UAGAUGAAAGAACUGGGU   1
  *|||-||||*|||||||||||||
targets:3024   GUUCUAUCUUCUUUCUUGACCCA   3046

3.0 PREDICTED: Zea mays uncharacterized LOC100273430 (pco141670(283)), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008683221.2
ncRNA:22   GAAG-UAGAUGAAAGAACUGGGU   1
  *|||-||||*|||||||||||||
targets:2862   GUUCUAUCUUCUUUCUUGACCCA   2884

3.0 PREDICTED: Zea mays uncharacterized LOC100273430 (pco141670(283)), transcript variant X2, mRNA NA coding protein psRNATarget