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BaseInfo

ncRNA ID	novel_zma_miR571
Species	Zea mays
Class	miRNA
Genome position	Chr8:4080525-4080628 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR1743455;SRR3341856;SRR1745812;SRR4237221;SRR4237222;SRR4237223;SRR4237224;SRR4237225;SRR4237226;SRR4237227;SRR5099742;SRR5100248;SRR5100255;SRR5105959;SRR2089699;SRR2089702;SRR2089703;SRR2089704;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - AAGAAUGGAGAUGUGAGGAUC - 21
Stem-loop(if miRNA)	--          A  U                     CAGUG G    G  A   AAGAAUGGAG UG GAGGAUCUUUUUAAAAAUAUC     C AGGU GA G   |||||||||| || |||||||||||||||||||||     | |||| ||   UUCUUACCUC AC CUCCUGGAAAAAUUUUUAUAG     G UUUA UU G GG          C  C                     UAUAA G    G  G
Stem-loop sequence	AAGAAUGGAGAUGUGAGGAUCUUUUUAAAAAUAUCCAGUGCGAGGUGGAAGGGUUGAUUUGGAAUAUGAUAUUUUUAAAAAGGUCCUCCCACCUCCAUUCUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ057899.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:41   UCUCCUUUCAUCUCCAUUCUA   61 Target Full Sequence	3.0	TSA: Zea mays contig59021, mRNA sequence	NA	coding protein	psRNATarget
EU943216.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:93   UCUCCUUUCAUCUCCAUUCUA   113 Target Full Sequence	3.0	Zea mays clone 1587932 mRNA sequence	NA	coding protein	psRNATarget
EU956176.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:120   UCUCCUUUCAUCUCCAUUCUA   140 Target Full Sequence	3.0	Zea mays clone 1558509 mRNA sequence	NA	coding protein	psRNATarget
AF113521.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:77   UCUCCUUUCAUCUCCAUUCUA   97 Target Full Sequence	3.0	Zea mays putative transcription factor mRNA sequence	NA	coding protein	psRNATarget
BT055575.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:71   UCUCCUUUCAUCUCCAUUCUA   91 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0036F01 mRNA, complete cds	NA	coding protein	psRNATarget
BT088268.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:41   UCUCCUUUCAUCUCCAUUCUA   61 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0107M20 mRNA, complete cds	NA	coding protein	psRNATarget
BT016648.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:65   UCUCCUUUCAUCUCCAUUCUA   85 Target Full Sequence	3.0	Zea mays clone Contig481 mRNA sequence	NA	coding protein	psRNATarget
XM_008676877.2	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:108   UCUCCUUUCAUCUCCAUUCUA   128 Target Full Sequence	3.0	PREDICTED: Zea mays RGG repeats nuclear RNA binding protein C (LOC103651256), mRNA	NA	coding protein	psRNATarget
EU959869.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:88   UCUCCUUUCAUCUCCAUUCUA   108 Target Full Sequence	3.0	Zea mays clone 220186 mRNA sequence	NA	coding protein	psRNATarget
NM_001294266.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:250   UCUCCUUUCAUCUCCAUUCUA   270 Target Full Sequence	3.0	Zea mays plasminogen activator inhibitor 1 RNA-binding protein (LOC100282553), mRNA	NA	coding protein	psRNATarget
BT039628.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:250   UCUCCUUUCAUCUCCAUUCUA   270 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0035D01 mRNA, complete cds	NA	coding protein	psRNATarget
AY103606.1	ncRNA:21   CUAGGAGUGUAGAGGUAAGAA   1   **||||=*||||||||||||* targets:302   UCUCCUUUCAUCUCCAUUCUA   322 Target Full Sequence	3.0	Zea mays PCO150737 mRNA sequence	NA	coding protein	psRNATarget