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BaseInfo

ncRNA ID	novel_zma_miR562
Species	Zea mays
Class	miRNA
Genome position	Chr10:149712893-149712974 [-]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	59 - GGAGAGGAUUGGAGGGGCUAAAAU - 82
Stem-loop(if miRNA)	--    A                   C  -   C       A   GGAG GGAUUGGAGGGGCUAAAAU UC CUC UUAUUUA U   |||| ||||||||||||||||||| || ||| |||||||   CCUC CCUAACUUCUCCGAUUUUA AG GAG AAUAAGU U GA    C                   -  U   U       U
Stem-loop sequence	GGAGAGGAUUGGAGGGGCUAAAAUCUCCUCCUUAUUUAAUUUUGAAUAAUGAGUGAAUUUUAGCCUCUUCAAUCCCCUCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||||||||||||||||||*|||| targets:3496   AUUUUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||||||||||||||||||*|||| targets:3531   AUUUUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*||||||||=||||||||||| targets:82   AUUCUAGCCCCUUCAAUCCUCUCC   105 Target Full Sequence	1.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*||||||||=||||||||||| targets:82   AUUCUAGCCCCUUCAAUCCUCUCC   105 Target Full Sequence	1.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
JB166530.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*||||||||=||||||||||| targets:82   AUUCUAGCCCCUUCAAUCCUCUCC   105 Target Full Sequence	1.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*||||||||=||||||||||| targets:1035   AUUCUAGCCCCUUCAAUCCUCUCC   1058 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*||||||||=||||||||||| targets:868   AUUCUAGCCCCUUCAAUCCUCUCC   891 Target Full Sequence	1.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*||||||||=||||||||||| targets:868   AUUCUAGCCCCUUCAAUCCUCUCC   891 Target Full Sequence	1.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*||||||||||||||||=||| targets:4123   AUUAUAGCCCCUCCAAUCCUUUCC   4146 Target Full Sequence	1.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |||*|||||||||||||||*|||| targets:214   AUUCUAGCCCCUCCAAUCCACUCC   237 Target Full Sequence	1.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   ||||||*||||||||||||*|||| targets:680   AUUUUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   ||||||*||||||||||||*|||| targets:1560   AUUUUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   ||||||*||||||||||||*|||| targets:1580   AUUUUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   ||||||*||||||||||||*|||| targets:1604   AUUUUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   ||||||*||||||||||||*|||| targets:1637   AUUUUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT017648.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   ||||*||||=|||||||||*|||| targets:163   AUUUAAGCCUCUCCAAUCCCCUCC   186 Target Full Sequence	2.5	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   ***||||||||||||||||*|||= targets:328   UGCUUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   |*||||*||||||||||||*|||| targets:1027   ACUUUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   UAAAAUCGGGGAGGUUAGGAGAGG   1   **||*|*||||||||||||||||* targets:81   CCUUAAUCCCCUCCAAUCCUCUCG   104 Target Full Sequence	2.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget