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BaseInfo

ncRNA ID	osa-miR169r-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:35782416-35782544 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	14 - UAGCCAAGGAUGAUUUGCCUG - 34
Stem-loop(if miRNA)	--------------   CCAU   C A     A    U        U  --     CA     AUCA      UC               AGG    CUU G UAGCC AGGA GAUUUGCC GU  AGCCC  UUGUC    GCUCUC  C               |||    ||| | ||||| |||| |||||||| ||  |||||  |||||    ||||||               UCC    GAG C AUCGG UCCU CUGAACGG CA  UCGGG  AACAG    CGAGAG  G ACCCUAUCGUAUUC   --AU   C C     C    -        U  UC     CC     ----      CU
Stem-loop sequence	AGGCCAUCUUCGAUAGCCAAGGAUGAUUUGCCUGUAGCCCCAUUGUCAUCAGCUCUCUCCGUCGAGAGCGACAACCGGGCUCUACUGGCAAGUCUCCUCGGCUACCCGAGUACCUCUUAUGCUAUCCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB288034.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   =|||||||||||=|||||||* targets:1139   UAGGCAAAUCAUUCUUGGCUC   1159 Target Full Sequence	2.5	Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK106398.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   =|||||||||||=|||||||* targets:1718   UAGGCAAAUCAUUCUUGGCUC   1738 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence	NA	coding protein	psRNATarget
XM_015772628.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   =|||||||||||=|||||||* targets:1713   UAGGCAAAUCAUUCUUGGCUC   1733 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4333575), mRNA	nuclear transcription factor Y subunit A-10(LOC4333575)	coding protein	psRNATarget
AB288029.1	ncRNA:21   GU-CCGUUUAGUAGGAACCGAU   1   ||-||||||||||||||||||* targets:649   CAUGGCAAAUCAUCCUUGGCUU   670 Target Full Sequence	3.0	Oryza sativa Japonica Group OsHAP2C mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
Y10905.1	ncRNA:21   GU-CCGUUUAGUAGGAACCGAU   1   ||-||||||||||||||||||* targets:800   CAUGGCAAAUCAUCCUUGGCUU   821 Target Full Sequence	3.0	Oryza sativa mRNA RAPB protein	NA	coding protein	psRNATarget
EU847006.1	ncRNA:21   GU-CCGUUUAGUAGGAACCGAU   1   ||-||||||||||||||||||* targets:797   CAUGGCAAAUCAUCCUUGGCUU   818 Target Full Sequence	3.0	Oryza sativa Japonica Group clone KCS364E08 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
CT832705.1	ncRNA:21   GU-CCGUUUAGUAGGAACCGAU   1   ||-||||||||||||||||||* targets:821   CAUGGCAAAUCAUCCUUGGCUU   842 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105G23, full insert sequence	NA	coding protein	psRNATarget
XM_015776336.1	ncRNA:21   GU-CCGUUUAGUAGGAACCGAU   1   ||-||||||||||||||||||* targets:869   CAUGGCAAAUCAUCCUUGGCUU   890 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-7 (LOC4331796), mRNA	nuclear transcription factor Y subunit A-7(LOC4331796)	coding protein	psRNATarget
AK069348.1	ncRNA:21   GU-CCGUUUAGUAGGAACCGAU   1   ||-||||||||||||||||||* targets:989   CAUGGCAAAUCAUCCUUGGCUU   1010 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023014B08, full insert sequence	NA	coding protein	psRNATarget
XM_015767949.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:964   UAGGCAAUUCAUCCUUGGCUU   984 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
AK318574.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:989   UAGGCAAUUCAUCCUUGGCUU   1009 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence	NA	coding protein	psRNATarget
XM_015767947.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:1217   UAGGCAAUUCAUCCUUGGCUU   1237 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015767946.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   =||||||*||||||||||||* targets:1341   UAGGCAAUUCAUCCUUGGCUU   1361 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015790064.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||= targets:1189   GUGGCAAUUCAUCCUUGGCUG   1209 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-2 (LOC4342440), mRNA	nuclear transcription factor Y subunit A-2(LOC4342440)	coding protein	psRNATarget
JC611919.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:807   GUGGCAAUUCAUCCUUGGCUU   827 Target Full Sequence	2.0	Sequence 81 from Patent WO2014106838	NA	coding protein	psRNATarget
AB288031.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1020   GUGGCAAUUCAUCCUUGGCUU   1040 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2E mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK101684.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1166   GUGGCAAUUCAUCCUUGGCUU   1186 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence	NA	coding protein	psRNATarget
CT834459.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1237   GUGGCAAUUCAUCCUUGGCUU   1257 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA222O23, full insert sequence	NA	coding protein	psRNATarget
XM_015791076.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1198   GUGGCAAUUCAUCCUUGGCUU   1218 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
EU847011.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1116   GUGGCAAUUCAUCCUUGGCUU   1136 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
XM_015791073.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1329   GUGGCAAUUCAUCCUUGGCUU   1349 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK062135.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1244   GUGGCAAUUCAUCCUUGGCUU   1264 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015791075.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1353   GUGGCAAUUCAUCCUUGGCUU   1373 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK071595.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1280   GUGGCAAUUCAUCCUUGGCUU   1300 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023106F21, full insert sequence	NA	coding protein	psRNATarget
XM_015776494.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1286   GUGGCAAUUCAUCCUUGGCUU   1306 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4333094), mRNA	nuclear transcription factor Y subunit A-4(LOC4333094)	coding protein	psRNATarget
XM_015791074.1	ncRNA:21   GUCCGUUUAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:2327   GUGGCAAUUCAUCCUUGGCUU   2347 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget

Reference

1	PMID:18353984 "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2	PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008).