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BaseInfo

ncRNA ID	novel_zma_miR555
Species	Zea mays
Class	miRNA
Genome position	Chr4:7516341-7516418 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	22
Mature sequence(if miRNA)	1 - CUUCUCUUCCGCUCCACUUGGA - 22
Stem-loop(if miRNA)	--    -   --  C  U       -GAA    AC      U   CUUC UCU  UC GC CCACUUG    AGUU  CAACUC U   |||| |||  || || |||||||    ||||  |||||| A   GAAG AGA  AG CG GGUGAGU    UCAA  GUUGAG G CU    U   AU  C  -       AGUA    --      U
Stem-loop sequence	CUUCUCUUCCGCUCCACUUGGAAAGUUACCAACUCUUAGUGAGUUGAACUAUGAUGAGUGGGCCGAUAAGAUGAAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542222.1	ncRNA:22   AGGUUCA--CCUCGCCUUCUCUUC   1   *||||||--||||||||||||||| targets:743   ACCAAGUACGGAGCGGAAGAGAAG   766 Target Full Sequence	2.5	PREDICTED: Zea mays GDSL esterase/lipase (LOC100382211), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008656986.2	ncRNA:22   AGGUUCA--CCUCGCCUUCUCUUC   1   *||||||--||||||||||||||| targets:796   ACCAAGUACGGAGCGGAAGAGAAG   819 Target Full Sequence	2.5	PREDICTED: Zea mays GDSL esterase/lipase (LOC100382211), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656985.2	ncRNA:22   AGGUUCA--CCUCGCCUUCUCUUC   1   *||||||--||||||||||||||| targets:811   ACCAAGUACGGAGCGGAAGAGAAG   834 Target Full Sequence	2.5	PREDICTED: Zea mays GDSL esterase/lipase (LOC100382211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001174968.1	ncRNA:22   AGGUUCA--CCUCGCCUUCUCUUC   1   *||||||--||||||||||||||| targets:929   ACCAAGUACGGAGCGGAAGAGAAG   952 Target Full Sequence	2.5	Zea mays GDSL esterase/lipase (LOC100382211), mRNA	NA	coding protein	psRNATarget
BT063549.1	ncRNA:22   AGGUUCA--CCUCGCCUUCUCUUC   1   *||||||--||||||||||||||| targets:929   ACCAAGUACGGAGCGGAAGAGAAG   952 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0076F19 mRNA, complete cds	NA	coding protein	psRNATarget