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BaseInfo

ncRNA ID	novel_zma_miR554
Species	Zea mays
Class	miRNA
Genome position	Chr10:39101289-39101337 [-]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	22
Mature sequence(if miRNA)	28 - GGAGCCGUCUCUGCUUUGUCAG - 49
Stem-loop(if miRNA)	--     C  C     UU    AGC   GGAGC GU UCUGC  UGUC   A   ||||| || |||||  ||||   CCUCG UA AGACG  ACAG   C CA     U  -     CU    ACG
Stem-loop sequence	GGAGCCGUCUCUGCUUUGUCAGCACGCAGACAUCGCAGAAUUGCUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538918.1	ncRNA:22   GACUGUUUCGUCUCUGCCGAGG   1   =||||||||||||||||*|||| targets:1090   UUGACAAAGCAGAGACGACUCC   1111 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280126 (LOC100280126), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ089628.1	ncRNA:22   GACUGUUUCGUCUCUGCCGAGG   1   =|*|*||||||||||||||||= targets:55   UUCAGAAAGCAGAGACGGCUCU   76 Target Full Sequence	2.0	TSA: Zea mays contig25274, mRNA sequence	NA	coding protein	psRNATarget
BT061126.1	ncRNA:22   GACUGUUUCGUCUCUGCCGAGG   1   =|*|*||||||||||||||||= targets:800   UUCAGAAAGCAGAGACGGCUCU   821 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0110K09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156768.1	ncRNA:22   GACUGUUUCGUCUCUGCCGAGG   1   =|*|*||||||||||||||||= targets:814   UUCAGAAAGCAGAGACGGCUCU   835 Target Full Sequence	2.0	Zea mays phosphopantothenate--cysteine ligase (LOC100283870), mRNA	NA	coding protein	psRNATarget
EU966224.1	ncRNA:22   GACUGUUUCGUCUCUGCCGAGG   1   =|*|*||||||||||||||||= targets:814   UUCAGAAAGCAGAGACGGCUCU   835 Target Full Sequence	2.0	Zea mays clone 292679 phosphopantothenate--cysteine ligase mRNA, complete cds	NA	coding protein	psRNATarget
BT069825.1	ncRNA:22   GACUGUUUCGUCUCUGCCGAGG   1   =|*|*||||||||||||||||= targets:963   UUCAGAAAGCAGAGACGGCUCU   984 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0286G21 mRNA, complete cds	NA	coding protein	psRNATarget