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BaseInfo

ncRNA ID	novel_zma_miR553
Species	Zea mays
Class	miRNA
Genome position	Chr8:27031896-27031958 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287160;SRR5451004;SRR5451006;SRR2089701;SRR2089704;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - GAAAACCGCCUGUAGAAAUGGCCU - 24
Stem-loop(if miRNA)	--  A       UG        G  -     A   GA AACCGCC  UAGAAAUG CC UCCAC G   || |||||||  |||||||| || ||||| U   CU UUGGCGG  AUCUUUAC GG AGGUG U AU  C       UG        -  C     U
Stem-loop sequence	GAAAACCGCCUGUAGAAAUGGCCUCCACAGUUUGUGGACGGCAUUUCUAGUGGCGGUUCUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943186.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   **||=|||||||||||||||||*= targets:1918   UUGCUAUUUCUACAGGCGGUUUCU   1941 Target Full Sequence	2.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||||||||||| targets:35   UGG--AUUUUUACAGGCGGUUUUC   56 Target Full Sequence	1.0	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
JB163546.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||||||||||| targets:35   UGG--AUUUUUACAGGCGGUUUUC   56 Target Full Sequence	1.0	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||||||||||| targets:35   UGG--AUUUUUACAGGCGGUUUUC   56 Target Full Sequence	1.0	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235189.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||*|||||||| targets:76   UGG--AUUUUUACAGACGGUUUUC   97 Target Full Sequence	2.5	Sequence 1184 from Patent EP2985353	NA	coding protein	psRNATarget
HI403059.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||*|||||||| targets:76   UGG--AUUUUUACAGACGGUUUUC   97 Target Full Sequence	2.5	Sequence 1184 from Patent EP2074227	NA	coding protein	psRNATarget
JB163520.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||*|||||||| targets:76   UGG--AUUUUUACAGACGGUUUUC   97 Target Full Sequence	2.5	Sequence 1184 from Patent EP2559767	NA	coding protein	psRNATarget
EU944427.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   |**=*||||||||*|||||||||= targets:589   AAUUGAUUUCUACUGGCGGUUUUU   612 Target Full Sequence	2.5	Zea mays clone 218366 mRNA sequence	NA	coding protein	psRNATarget