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BaseInfo

ncRNA ID	novel_zma_miR550
Species	Zea mays
Class	miRNA
Genome position	Chr8:95381484-95381569 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089713;SRR2089715;SRR2287160;SRR2287162;SRR2287163;SRR2287164;SRR5451003;SRR5451006;SRR1997866;SRR2089698;SRR2089699;SRR2089702;SRR2089704;SRR2089705;SRR2089707
Length	22
Mature sequence(if miRNA)	65 - CGGAGGGGAUUGGAGAGGCUAA - 86
Stem-loop(if miRNA)	--    G   AU     -A           C   UCA      A   CGGA GGG  UGGAG  GGCUAAAAUCC CUU   AAUUCA U   |||| |||  |||||  ||||||||||| |||   ||||||   GCUU UUC  GCCUU  CCGAUUUUAGG GAA   UUAAGU U UG    G   CG     CC           C   -CG      U
Stem-loop sequence	CGGAGGGGAUUGGAGAGGCUAAAAUCCCCUUUCAAAUUCAAUUUUGAAUUGCAAGCGGAUUUUAGCCCCUUCCGGCCUUGUUCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*||||||||||||||| targets:3499   UUAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*||||||||||||||| targets:3534   UUAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163850.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*|||||||=||||||| targets:73   UUAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	2.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*|||||||=||||||| targets:73   UUAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	2.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*|||||||=||||||| targets:73   UUAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	2.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*|||=||||||||||| targets:201   UUAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
JB166281.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*|||=||||||||||| targets:201   UUAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*|||=||||||||||| targets:201   UUAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
BT017648.1	ncRNA:22   AAU-CGGAGAGGUUAGGGGAGGC   1   |||-||||||||||||||||||* targets:165   UUAAGCCUCUCCAAUCCCCUCCU   187 Target Full Sequence	3.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*|||||||||||||=| targets:331   UUAGCCCCUCCAAUCCCCUCUG   352 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   ||||||*||=|||||||||||| targets:1112   UUAGCCCCUUCAAUCCCCUCCG   1133 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   |||*||*||||||||||||||| targets:683   UUAUCCCCUCCAAUCCCCUCCG   704 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   |||*||*||||||||||||||| targets:1030   UUAACCCCUCCAAUCCCCUCCG   1051 Target Full Sequence	2.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   |||*||*||||||||||||||| targets:1563   UUAUCCCCUCCAAUCCCCUCCG   1584 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   |||*||*||||||||||||||| targets:1583   UUAUCCCCUCCAAUCCCCUCCG   1604 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   |||*||*||||||||||||||| targets:1607   UUAUCCCCUCCAAUCCCCUCCG   1628 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   |||*||*||||||||||||||| targets:1640   UUAUCCCCUCCAAUCCCCUCCG   1661 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   *|||||*|||||||||*||||| targets:217   CUAGCCCCUCCAAUCCACUCCG   238 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
EU941453.1	ncRNA:22   AAUCGGAGAGGUUAGGGGAGGC   1   *|||||*|*||||||||||||* targets:58   CUAGCCCCCCCAAUCCCCUCCU   79 Target Full Sequence	3.0	Zea mays clone 1453301 mRNA sequence	NA	coding protein	psRNATarget