ncRNA ID | osa-miR169r-3p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:35782416-35782544 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 86 - UGGCAAGUCUCCUCGGCUACC - 106 |
Stem-loop(if miRNA) |
--------------   CCAU   C A     A    U        U  --     CA     AUCA      UC               AGG    CUU G UAGCC AGGA GAUUUGCC GU  AGCCC  UUGUC    GCUCUC  C               |||    ||| | ||||| |||| |||||||| ||  |||||  |||||    ||||||               UCC    GAG C AUCGG UCCU CUGAACGG CA  UCGGG  AACAG    CGAGAG  G ACCCUAUCGUAUUC   --AU   C C     C    -        U  UC     CC     ----      CU |
Stem-loop sequence | AGGCCAUCUUCGAUAGCCAAGGAUGAUUUGCCUGUAGCCCCAUUGUCAUCAGCUCUCUCCGUCGAGAGCGACAACCGGGCUCUACUGGCAAGUCUCCUCGGCUACCCGAGUACCUCUUAUGCUAUCCCA |
1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |