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BaseInfo

ncRNA ID osa-miR169r-3p
Species Oryza sativa
Class miRNA
Genome position Chr3:35782416-35782544 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 86 - UGGCAAGUCUCCUCGGCUACC - 106
Stem-loop(if miRNA) --------------   CCAU   C A     A    U        U  --     CA     AUCA      UC
              AGG    CUU G UAGCC AGGA GAUUUGCC GU  AGCCC  UUGUC    GCUCUC  C
              |||    ||| | ||||| |||| |||||||| ||  |||||  |||||    ||||||
              UCC    GAG C AUCGG UCCU CUGAACGG CA  UCGGG  AACAG    CGAGAG  G
ACCCUAUCGUAUUC   --AU   C C     C    -        U  UC     CC     ----      CU
Stem-loop sequence AGGCCAUCUUCGAUAGCCAAGGAUGAUUUGCCUGUAGCCCCAUUGUCAUCAGCUCUCUCCGUCGAGAGCGACAACCGGGCUCUACUGGCAAGUCUCCUCGGCUACCCGAGUACCUCUUAUGCUAUCCCA

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).