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BaseInfo

ncRNA ID	novel_zma_miR549
Species	Zea mays
Class	miRNA
Genome position	Chr8:98140201-98140363 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713;SRR2089714;SRR2287164;SRR5100248;SRR2089699;SRR2089702;SRR2089703;SRR2089705
Length	22
Mature sequence(if miRNA)	142 - UACAUUUUAAAUCUGAGACAUC - 163
Stem-loop(if miRNA)	--              -   A         C    C    ---  C   ACC           AAA         ACCUCCUUCCCA    G   UACAUUUUAAAUCU GAG CAUCCAUCU AUAU UAAC   AG AGC   AAUUUUAUAAA   AACUCUUCU            UGGC A   |||||||||||||| ||| ||||||||| |||| ||||   || |||   |||||||||||   |||||||||            ||||   GUGUAAAAUUUAGA CUC GUAGGUAGA UGUA GUUG   UC UCG   UUAAAAUGUUU   UUGGGGAGA            ACCG G AC              U   -         A    A    CCA  C   --A           --G         ------------    A
Stem-loop sequence	UACAUUUUAAAUCUGAGACAUCCAUCUCAUAUCUAACAGCAGCACCAAUUUUAUAAAAAAAACUCUUCUACCUCCUUCCCAUGGCGAGAGCCAAGAGGGGUUGUUUGUAAAAUUAGCUCCUACCGUUGAAUGUAAGAUGGAUGCUCUAGAUUUAAAAUGUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661794.2	ncRNA:22   CUACAGAGUCUAAAUUUUACAU   1   |||||=|||||||||||||||= targets:1052   GAUGUUUCAGAUUUAAAAUGUG   1073 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661793.2	ncRNA:22   CUACAGAGUCUAAAUUUUACAU   1   |||||=|||||||||||||||= targets:1043   GAUGUUUCAGAUUUAAAAUGUG   1064 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646380.2	ncRNA:22   CUACAGAGUCUAAAUUUUACAU   1   *|||||*=|||||||||||||| targets:810   AAUGUCCUAGAUUUAAAAUGUA   831 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase UPL7 (LOC103625986), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT069464.1	ncRNA:22   CUACAGAGUCUAAAUUUUACAU   1   ****||||||||*||||||||| targets:770   ACCCUCUCAGAUCUAAAAUGUA   791 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0139F17 mRNA, complete cds	NA	coding protein	psRNATarget