Search result

BaseInfo

ncRNA ID	novel_zma_miR533
Species	Zea mays
Class	miRNA
Genome position	Chr8:137427095-137427240 [-]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	123 - AGGAGCCAAGUAGAAUGGAGUCGU - 146
Stem-loop(if miRNA)	--                G  GU      -A  - -   AUU    -----       GU A         GU   U   AGGAGCCAAGUAGAAU GA  CGUUCC  UC C CUG   CUAG     GAACGGA  C CUCUGUUCU  GUU G   |||||||||||||||| ||  ||||||  || | |||   ||||     |||||||  | |||||||||  |||   UUCUCGGUUCAUCUUG CU  GCAAGG  AG G GAC   GGUU     UUUGUCU  G GAGGCAAGG  UAA G AC                G  UG      CA  U A   GUU    UGUUU       UG C         UC   U
Stem-loop sequence	AGGAGCCAAGUAGAAUGGAGUCGUUCCAUCCCUGAUUCUAGGAACGGAGUCACUCUGUUCUGUGUUUGGUAAUCUGGAACGGAGCGGUUCUGUUUUUUGUUUGGUUGCAGAGUGAACGGAACGGUUCGGUUCUACUUGGCUCUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544989.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||||||=||||||||||||||| targets:40   ACGACUCCGUUCUACUUGGCUCCU   63 Target Full Sequence	1.0	PREDICTED: Zea mays RING/FYVE/PHD zinc finger superfamily protein (umc2749), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544984.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||||||=||||||||||||||| targets:37   ACGACUCCGUUCUACUUGGCUCCU   60 Target Full Sequence	1.0	PREDICTED: Zea mays RING/FYVE/PHD zinc finger superfamily protein (umc2749), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544988.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||||||=||||||||||||||| targets:34   ACGACUCCGUUCUACUUGGCUCCU   57 Target Full Sequence	1.0	PREDICTED: Zea mays RING/FYVE/PHD zinc finger superfamily protein (umc2749), transcript variant X5, mRNA	NA	coding protein	psRNATarget
HI409686.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||||||=|||||||||||||=| targets:161   ACGACUCCGUUCUACUUGGCUCUU   184 Target Full Sequence	2.5	Sequence 7811 from Patent EP2074227	NA	coding protein	psRNATarget
JB170147.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||||||=|||||||||||||=| targets:161   ACGACUCCGUUCUACUUGGCUCUU   184 Target Full Sequence	2.5	Sequence 7811 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241816.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||||||=|||||||||||||=| targets:161   ACGACUCCGUUCUACUUGGCUCUU   184 Target Full Sequence	2.5	Sequence 7811 from Patent EP2985353	NA	coding protein	psRNATarget
HI408626.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||=|||=||||||||||||||| targets:194   ACGAUUCCGUUCUACUUGGCUCCU   217 Target Full Sequence	1.0	Sequence 6751 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240756.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||=|||=||||||||||||||| targets:194   ACGAUUCCGUUCUACUUGGCUCCU   217 Target Full Sequence	1.0	Sequence 6751 from Patent EP2985353	NA	coding protein	psRNATarget
JB169087.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   ||||=|||=||||||||||||||| targets:194   ACGAUUCCGUUCUACUUGGCUCCU   217 Target Full Sequence	1.0	Sequence 6751 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542520.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   |||=||||=||||||||||||||| targets:1765   ACGGCUCCGUUCUACUUGGCUCCU   1788 Target Full Sequence	1.0	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 38 (LOC100502147), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ075627.1	ncRNA:24   UGCUGAGGUAAGAUGAACCGAGGA   1   |||=||||=|||||||||||||=| targets:5   ACGGCUCCGUUCUACUUGGCUCUU   28 Target Full Sequence	2.5	TSA: Zea mays contig11264, mRNA sequence	NA	coding protein	psRNATarget