| ncRNA ID | osa-miR390-5p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr3:34275140-34275230 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 53 - AAGCUCAGGAGGGAUAGCGCC - 73 |
| Stem-loop(if miRNA) |
U U U A G C AAA GGUA GGAACAA CC UG AGCUCAGGA GGAUAGCGCCU G U |||| ||||||| || || ||||||||| ||||||||||| | CCAU UCUUGUU GG AC UCGAGUCCU UCUAUCGCGGA C C - U U C A U AAA |
| Stem-loop sequence | GGUAUGGAACAAUCCUUGAAGCUCAGGAGGGAUAGCGCCUCGAAAUCAAACUAGGCGCUAUCUAUCCUGAGCUCCAUGGUUUGUUCUUACC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015768373.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group leucine-rich repeat receptor protein kinase MSL1 (LOC4328601), mRNA | leucine-rich repeat receptor protein kinase MSL1(LOC4328601) | coding protein | psRNATarget | |||||||||
| AK287875.1 |
|
3.0 | Oryza sativa Japonica Group cDNA, clone: J065205K01, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:15805478
"Cloning and characterization of microRNAs from rice"; Sunkar R, Girke T, Jain PK, Zhu JK; Plant Cell. 17:1397-1411(2005). |
| 2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |