Search result

BaseInfo

ncRNA ID	novel_zma_miR525
Species	Zea mays
Class	miRNA
Genome position	Chr8:159831543-159831608 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089699
Length	24
Mature sequence(if miRNA)	1 - CUCCAGAACAGAGAAGCCAACGCC - 24
Stem-loop(if miRNA)	--     U       CC         --UUU   U   CGUUG CUUCUUU  GUUUUGGAG     GGC G   ||||| |||||||  |||||||||     |||   GCAAC GAAGAGA  CAAGACCUC     CCG U CC     C       --         UGCGU   C
Stem-loop sequence	CGUUGUCUUCUUUCCGUUUUGGAGUUUGGCUGUCGCCUGCGUCUCCAGAACAGAGAAGCCAACGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KP780167.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:253   GGCGUUGGCUUCUCUGUUCUGGAG   276 Target Full Sequence	0.0	Zea mays disrupted autophagy-related 12 (atg12) mRNA, atg12-1 allele, partial sequence; and insertion sequence UniformMu, complete sequence	NA	coding protein	psRNATarget
KP780168.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:277   GGCGUUGGCUUCUCUGUUCUGGAG   300 Target Full Sequence	0.0	Zea mays disrupted autophagy-related 12 (atg12) mRNA, atg12-2 allele, partial sequence; and insertion sequence UniformMu, complete sequence	NA	coding protein	psRNATarget
DQ138637.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:432   GGCGUUGGCUUCUCUGUUCUGGAG   455 Target Full Sequence	0.0	Zea mays brittle stalk 2 Mu insertion mutant (bk2) mRNA, bk2-2 allele, complete sequence	NA	coding protein	psRNATarget
BT062272.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:265   GGCGUUGGCUUCUCUGUUCUGGAG   288 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0272N12 mRNA, complete cds	NA	coding protein	psRNATarget
BT018607.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:101   GGCGUUGGCUUCUCUGUUCUGGAG   124 Target Full Sequence	0.0	Zea mays clone EL01N0450F01.d mRNA sequence	NA	coding protein	psRNATarget
BT063492.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:378   GGCGUUGGCUUCUCUGUUCUGGAG   401 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0068P19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656510.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:419   GGCGUUGGCUUCUCUGUUCUGGAG   442 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008656501.2	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:419   GGCGUUGGCUUCUCUGUUCUGGAG   442 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008656503.2	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:419   GGCGUUGGCUUCUCUGUUCUGGAG   442 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020542011.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:419   GGCGUUGGCUUCUCUGUUCUGGAG   442 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542012.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:419   GGCGUUGGCUUCUCUGUUCUGGAG   442 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542010.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||||||||||||||||||| targets:419   GGCGUUGGCUUCUCUGUUCUGGAG   442 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (si606058c09b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JN791417.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   ||||||||||||||||||=||||| targets:405   GGCGUUGGCUUCUCUGUUUUGGAG   428 Target Full Sequence	1.5	Zea mays rough endosperm 3-umu1 alpha isoform (Rgh3) mRNA, Rgh3-umu1 allele, complete cds, alternatively spliced	NA	coding protein	psRNATarget
JN791418.1	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   ||||||||||||||||||=||||| targets:405   GGCGUUGGCUUCUCUGUUUUGGAG   428 Target Full Sequence	1.5	Zea mays rough endosperm 3-umu1 gamma isoform (Rgh3) mRNA, Rgh3-umu1 allele, complete cds, alternatively spliced	NA	coding protein	psRNATarget
XM_008657690.2	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   ||||||||=||||||||||||||| targets:1198   GGCGUUGGUUUCUCUGUUCUGGAG   1221 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103635166 (LOC103635166), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657689.2	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   ||||||||=||||||||||||||| targets:1198   GGCGUUGGUUUCUCUGUUCUGGAG   1221 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103635166 (LOC103635166), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662590.2	ncRNA:24   CCGCAACCGAAGAGACAAGACCUC   1   |||||||*|||||||||||||||| targets:256   GGCGUUGACUUCUCUGUUCUGGAG   279 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103639909 (LOC103639909), mRNA	NA	coding protein	psRNATarget