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BaseInfo

ncRNA ID novel_zma_miR523
Species Zea mays
Class miRNA
Genome position Chr1:14495600-14495690 [+]
Reference genome RefGen_v4
Source SRR2089709
Length 23
Mature sequence(if miRNA) 69 - GCUUGUCAGUUGGCACUCGGCAA - 91
Stem-loop(if miRNA) --            AC  G               GAUUUUCAAAA
  GCCGAGUGUCAG  GG GGGCACUCGGCAAAG           A
  ||||||||||||  || |||||||||||||||           C
  CGGCUCACGGUU  CU UUCGUGAGCCGUUUC           C
AA            GA  G               AGACAGAAAUC
Stem-loop sequence GCCGAGUGUCAGACGGGGGGCACUCGGCAAAGGAUUUUCAAAAACCCUAAAGACAGACUUUGCCGAGUGCUUGUCAGUUGGCACUCGGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940798.1
ncRNA:23   AACGGCUCACGGUUGACUGUUCG   1
  *||*|*||||*||||||||||||
targets:83   CUGACAAGUGACAACUGACAAGC   105

2.5 Zea mays clone 1064564 mRNA sequence NA coding protein psRNATarget
XM_008651023.2
ncRNA:23   AACGGCUCACGGUUGACUGUUCG   1
  *||*|*||||*||||||||||||
targets:81   CUGACAAGUGACAACUGACAAGC   103

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g20730 (LOC103629919), mRNA NA coding protein psRNATarget