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BaseInfo

ncRNA ID	novel_zma_miR521
Species	Zea mays
Class	miRNA
Genome position	Chr4:91831993-91832156 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	141 - ACAUUCUGAUUUGCAGCCGGCUGC - 164
Stem-loop(if miRNA)	--        C    A           C   -C   --AC            UG               ---G  ACAAU   AU   AGCCGGCU CAAA CAGAAUGUUUA AGC  CUC    AAAAAGGAGGAU  GCCUCAUCUAUAGGU    CA     ACA  U   |||||||| |||| ||||||||||| |||  |||    ||||||||||||  |||||||||||||||    ||     |||  A   UCGGCCGA GUUU GUCUUACAAAU UUG  GAG    UUUUUCUUCCUA  UGGAGUGGAUGUCCA    GU     UGU  A CG        C    A           A   AA   AAUA            UU               GAUA  -CUAU   AA
Stem-loop sequence	AGCCGGCUCCAAAACAGAAUGUUUACAGCCCUCACAAAAAGGAGGAUUGGCCUCAUCUAUAGGUGCAACAAUACAAUUAAAAUGUUAUCUGAUAGACCUGUAGGUGAGGUUUAUCCUUCUUUUUAUAAGAGAAGUUAUAAACAUUCUGAUUUGCAGCCGGCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137162.1	ncRNA:24   CGUCGGCCGACGUUUAGUCUUACA   1   ||||||*||||||||*|||||||| targets:2057   GCAGCCCGCUGCAAAACAGAAUGU   2080 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA	NA	coding protein	psRNATarget
BT033928.1	ncRNA:24   CGUCGGCCGACGUUUAGUCUUACA   1   ||||||*||||||||*|||||||| targets:2057   GCAGCCCGCUGCAAAACAGAAUGU   2080 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682759.2	ncRNA:24   CGUCGGCCGACGUUUAGUCUUACA   1   ||||||*||||||||*|||||||| targets:2495   GCAGCCCGCUGCAAAACAGAAUGU   2518 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682758.2	ncRNA:24   CGUCGGCCGACGUUUAGUCUUACA   1   ||||||*||||||||*|||||||| targets:2498   GCAGCCCGCUGCAAAACAGAAUGU   2521 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA	NA	coding protein	psRNATarget