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BaseInfo

ncRNA ID	novel_zma_miR518
Species	Zea mays
Class	miRNA
Genome position	Chr8:175595619-175595737 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089713;SRR2287031;SRR2287159;SRR2287163;SRR2287164;SRR5451003;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089703;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AAUGAAAUAAAAUCUAGGGACUAA - 24
Stem-loop(if miRNA)	--       UC        C U       GUAU      C                      AGUCCCU  AUUUUAUU C UUUUAGU    AAAUUG UAAAUAUAGAAACUAAAAUA   |||||||  |||||||| | |||||||    |||||| |||||||||||||||||||A   UCAGGGA  UAAAAUAA G AAAAUCA    UUUAAU GUUUAUAUCUUUGAUUUUGA AA       UC        A U       AGAU      U
Stem-loop sequence	AGUCCCUUCAUUUUAUUCCUUUUUAGUGUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGUUAAUUUUAGAACUAAAAUGAAAUAAAAUCUAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052166.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   |||||||||||||||||||*|||| targets:777   UUAGUCCCUAGAUUUUAUUCCAUU   800 Target Full Sequence	1.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   ||||||||||*||||||||||||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.0	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   ||||||||||*||||||||||||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.0	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   ||||||||||*||||||||||||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.0	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   ||||||||||*|||||||||=||| targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52 Target Full Sequence	2.5	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163456.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   ||||||||||*|||||||||=||| targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52 Target Full Sequence	2.5	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   ||||||||||*|||||||||=||| targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52 Target Full Sequence	2.5	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
EU956677.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   *|||||||||*|||||||||=||| targets:2037   CUAGUCCCUACAUUUUAUUUUAUU   2060 Target Full Sequence	2.5	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   ||||||||||*||||||||*|||| targets:997   UUAGUCCCUACAUUUUAUUCCAUU   1020 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547032.1	ncRNA:24   AAUC-AGGGAUCUAAAAUAAAGUAA   1   *|=|-|||*|||||||||||||||| targets:2367   GUGGCUCCGUAGAUUUUAUUUCAUU   2391 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943563 (LOC109943563), mRNA	NA	coding protein	psRNATarget
EU969675.1	ncRNA:24   AAUC-AGGGAUCUAAAAUAAAGUAA   1   *|=|-|||*|||||||||||||||| targets:1778   GUGGCUCCGUAGAUUUUAUUUCAUU   1802 Target Full Sequence	1.0	Zea mays clone 333914 mRNA sequence	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   |||-|||||**||||||||||||| targets:2885   UUA-UCCCUCCAUUUUAUUUCAUU   2907 Target Full Sequence	2.0	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   |||-|||||**||||||||||||| targets:886   UUA-UCCCUCCAUUUUAUUUCAUU   908 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:24   AAUCAGGGAUCUAAAAUAAAGUAA   1   |||-|||||**||||||||||||| targets:886   UUA-UCCCUCCAUUUUAUUUCAUU   908 Target Full Sequence	2.0	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget