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BaseInfo

ncRNA ID	novel_zma_miR513
Species	Zea mays
Class	miRNA
Genome position	Chr8:176756851-176756948 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089703;SRR2089706
Length	21
Mature sequence(if miRNA)	1 - UUUGAGGGGGAUUGGAGGGGA - 21
Stem-loop(if miRNA)	--U   A                  U             U  AAU   U    UUG GGGGGAUUGGAGGGGAUU AAUCCCCUCCUAU CA   UUG A    ||| |||||||||||||||||| ||||||||||||| ||   |||    AAC CCCUCUAACCUCCUCUAA UUAGGGGAGGAUA GU   AAC U CCU   G                  U             U  CCU   C
Stem-loop sequence	UUUGAGGGGGAUUGGAGGGGAUUUAAUCCCCUCCUAUUCAAAUUUGUAUCCAAUCCUGUAUAGGAGGGGAUUUAAUCUCCUCCAAUCUCCCGCAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406037.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:94   UCCCCUUCAAUCCCCCUCAAA   114 Target Full Sequence	1.0	Sequence 4162 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238167.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:94   UCCCCUUCAAUCCCCCUCAAA   114 Target Full Sequence	1.0	Sequence 4162 from Patent EP2985353	NA	coding protein	psRNATarget
JB166498.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:94   UCCCCUUCAAUCCCCCUCAAA   114 Target Full Sequence	1.0	Sequence 4162 from Patent EP2559767	NA	coding protein	psRNATarget
EU960473.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:101   UCCCCUUCAAUCCCCCUCAAA   121 Target Full Sequence	1.0	Zea mays clone 225209 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963775.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:234   UCCCCUUCAAUCCCCCUCAAA   254 Target Full Sequence	1.0	Zea mays clone 272562 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942334.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:242   UCCCCUUCAAUCCCCCUCAAA   262 Target Full Sequence	1.0	Zea mays clone 1480331 mRNA sequence	NA	coding protein	psRNATarget
EU961196.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:376   UCCCCUUCAAUCCCCCUCAAA   396 Target Full Sequence	1.0	Zea mays clone 233383 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001245881.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:760   UCCCCUUCAAUCCCCCUCAAA   780 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
EU964415.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:760   UCCCCUUCAAUCCCCCUCAAA   780 Target Full Sequence	1.0	Zea mays clone 278711 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT069598.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:855   UCCCCUUCAAUCCCCCUCAAA   875 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0180C20 mRNA, complete cds	NA	coding protein	psRNATarget
BT069064.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:823   UCCCCUUCAAUCCCCCUCAAA   843 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT065224.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:806   UCCCCUUCAAUCCCCCUCAAA   826 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150473.2	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:861   UCCCCUUCAAUCCCCCUCAAA   881 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
BT062705.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:861   UCCCCUUCAAUCCCCCUCAAA   881 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678753.2	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:906   UCCCCUUCAAUCCCCCUCAAA   926 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964521.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||||||||| targets:922   UCCCCUUCAAUCCCCCUCAAA   942 Target Full Sequence	1.0	Zea mays clone 279503 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||||||||||||||||* targets:3273   UCCCCUCCAAUCCCCCUCAAU   3293 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||||||||||||||||* targets:1594   UCCCCUCCAAUCCCCCUCAAU   1614 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||||||||||||||||* targets:1594   UCCCCUCCAAUCCCCCUCAAU   1614 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT054737.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||||=|||||||=|||||| targets:191   UCCCCUUCAAUCCCUCUCAAA   211 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   ||||=|||||||||||||||* targets:33   UCCCUUCCAAUCCCCCUCAAU   53 Target Full Sequence	2.0	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
XM_020551510.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   *|||||||||||||||||||* targets:1568   ACCCCUCCAAUCCCCCUCAAU   1588 Target Full Sequence	1.0	PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   |||||||=|||||*||||||| targets:4870   UCCCCUCUAAUCCACCUCAAA   4890 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   |||||||=|||||*||||||| targets:5097   UCCCCUCUAAUCCACCUCAAA   5117 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   *|||||=|||||||||||||* targets:843   ACCCCUUCAAUCCCCCUCAAU   863 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:21   AGGGGAGGUUAGGGGGAGUUU   1   |||*||||||||||||||||* targets:3921   UCCACUCCAAUCCCCCUCAAU   3941 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget