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BaseInfo

ncRNA ID novel_zma_miR508
Species Zea mays
Class miRNA
Genome position Chr8:169397657-169397718 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089702
Length 23
Mature sequence(if miRNA) 40 - AAGAGAUUAUAGGAGUGCGGGUU - 62
Stem-loop(if miRNA) ---  U        CA   AG   --       
   CC UAUUUUUA  UAA  UCU  UCUAUUAU
   || ||||||||  |||  |||  |||||||A
   GG GUGAGGAU  AUU  AGA  AGAUGAUG
UUG  C        --   AG   AU       
Stem-loop sequence CCUUAUUUUUACAUAAAGUCUUCUAUUAUAGUAGUAGAUAAGAGAUUAUAGGAGUGCGGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
S78780.1
ncRNA:23   UUGGGCGUGAGGAUAUUAGAGAA   1
  |||||||||||=|||||||||||
targets:65   AACCCGCACUCUUAUAAUCUCUU   87

1.5 (gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt] NA coding protein psRNATarget