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BaseInfo

ncRNA ID novel_zma_miR497
Species Zea mays
Class miRNA
Genome position Chr8:139833815-139833874 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089712;SRR2089713;SRR2089715;SRR1997865;SRR1997866;SRR2089700;SRR2089701;SRR2089705;SRR2089706
Length 22
Mature sequence(if miRNA) 39 - CCUGAUGACAUCUGAGUCGGUG - 60
Stem-loop(if miRNA) CU    A  U     CAG  G  GCC    A
  CACC GG CUCGG   GU GU   GGCG G
  |||| || |||||   || ||   |||| G
  GUGG CU GAGUC   CA UA   CCGC A
--    -  -     -UA  G  GUC    A
Stem-loop sequence CUCACCAGGUCUCGGCAGGUGGUGCCGGCGAGGAACGCCCUGAUGACAUCUGAGUCGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661030.2
ncRNA:22   GUGGCUGAGUCUACAGUAGUCC   1
  ||||*||||||||||||||*||
targets:1671   CACCUACUCAGAUGUCAUCUGG   1692

2.5 PREDICTED: Zea mays subtilisin-like protease SBT6.1 (LOC103638020), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661029.2
ncRNA:22   GUGGCUGAGUCUACAGUAGUCC   1
  ||||*||||||||||||||*||
targets:1742   CACCUACUCAGAUGUCAUCUGG   1763

2.5 PREDICTED: Zea mays subtilisin-like protease SBT6.1 (LOC103638020), transcript variant X1, mRNA NA coding protein psRNATarget