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BaseInfo

ncRNA ID novel_zma_miR495
Species Zea mays
Class miRNA
Genome position Chr8:126987691-126987757 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089714;SRR2287162;SRR1997865;SRR5451004;SRR5451005;SRR1997866;SRR2089698;SRR2089702;SRR2089703
Length 24
Mature sequence(if miRNA) 1 - GCUCUCUGCGGAGGCGUGGACGGU - 24
Stem-loop(if miRNA) --      U  GG   -       G  CCG    A
  GCUCUC GC  AGG CGUGGAC GU   CGGC C
  |||||| ||  ||| ||||||| ||   |||| A
  CGAGAG UG  UCC GUGCCUG CA   GCCG G
CA      -  GG   A       A  --A    G
Stem-loop sequence GCUCUCUGCGGAGGCGUGGACGGUCCGCGGCACAGGGCCGAACAGUCCGUGACCUGGGUGAGAGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT039435.1
ncRNA:24   UGGCAGGUGCGGAGGCGUCUCUCG   1
  |||||||=||||||||||||||||
targets:306   ACCGUCCGCGCCUCCGCAGAGAGC   329

1.0 Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds NA coding protein psRNATarget
NM_001349036.1
ncRNA:24   UG-GCAGGUGCGGAGGCGUCUCUCG   1
  ||-||*||||||||||||*|||||*
targets:95   ACGCGCCCACGCCUCCGCUGAGAGA   119

2.5 Zea mays Protein NRT1/ PTR FAMILY 5.10 (LOC100382172), mRNA NA coding protein psRNATarget