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BaseInfo

ncRNA ID	novel_zma_miR484
Species	Zea mays
Class	miRNA
Genome position	Chr1:13782632-13782753 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713;SRR2089715;SRR2287159;SRR2287161;SRR2287162;SRR2287164;SRR2287165;SRR1618883;SRR1745812;SRR3385575;SRR4237222;SRR4237224;SRR4237226;SRR4237227;SRR5099742;SRR1997865;SRR5100255;SRR5105961;SRR5451003;SRR5451004;SRR1997866;SRR2089701
Length	21
Mature sequence(if miRNA)	102 - UUCGGACCAGGCUUCAUUCCC - 122
Stem-loop(if miRNA)	--     UU        G       AA    GC  AUUAAUCAUCCAUGCCAUGGAAGCAG   GAAUG  GUCUGGUU GAGACCU  CACC  GA                          C   |||||  |||||||| |||||||  ||||  ||   CUUAC  CGGACCAG CUUUGGA  GUGG  GU                          A CC     UU        G       AG    UA  ACGUACCUAUCUACGUCCGCCCGUAU
Stem-loop sequence	GAAUGUUGUCUGGUUGGAGACCUAACACCGCGAAUUAAUCAUCCAUGCCAUGGAAGCAGCAUAUGCCCGCCUGCAUCUAUCCAUGCAUGAUGGUGGAAGGUUUCGGACCAGGCUUCAUUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235261.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||| targets:12   GGGAAUGAAGCCUGGUCCGAA   32 Target Full Sequence	0.0	Sequence 1256 from Patent EP2985353	NA	coding protein	psRNATarget
JB163898.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||| targets:12   GGGAAUGAAGCCUGGUCCGAA   32 Target Full Sequence	0.0	Sequence 1562 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235567.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||| targets:12   GGGAAUGAAGCCUGGUCCGAA   32 Target Full Sequence	0.0	Sequence 1562 from Patent EP2985353	NA	coding protein	psRNATarget
JB163592.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||| targets:12   GGGAAUGAAGCCUGGUCCGAA   32 Target Full Sequence	0.0	Sequence 1256 from Patent EP2559767	NA	coding protein	psRNATarget
HI403131.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||| targets:12   GGGAAUGAAGCCUGGUCCGAA   32 Target Full Sequence	0.0	Sequence 1256 from Patent EP2074227	NA	coding protein	psRNATarget
HI403437.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||| targets:12   GGGAAUGAAGCCUGGUCCGAA   32 Target Full Sequence	0.0	Sequence 1562 from Patent EP2074227	NA	coding protein	psRNATarget
HI403240.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1365 from Patent EP2074227	NA	coding protein	psRNATarget
JB163701.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1365 from Patent EP2559767	NA	coding protein	psRNATarget
HI402941.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1066 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235071.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1066 from Patent EP2985353	NA	coding protein	psRNATarget
JB163402.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1066 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235370.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1365 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235540.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1535 from Patent EP2985353	NA	coding protein	psRNATarget
HI403108.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1233 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235313.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1308 from Patent EP2985353	NA	coding protein	psRNATarget
JB169124.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 6788 from Patent EP2559767	NA	coding protein	psRNATarget
JB163569.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1233 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235617.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1612 from Patent EP2985353	NA	coding protein	psRNATarget
HI403487.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1612 from Patent EP2074227	NA	coding protein	psRNATarget
HI408663.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 6788 from Patent EP2074227	NA	coding protein	psRNATarget
JB163948.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1612 from Patent EP2559767	NA	coding protein	psRNATarget
HI403410.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1535 from Patent EP2074227	NA	coding protein	psRNATarget
HI403183.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1308 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235238.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1233 from Patent EP2985353	NA	coding protein	psRNATarget
JB163644.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1308 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240793.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 6788 from Patent EP2985353	NA	coding protein	psRNATarget
JB163871.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235573.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1568 from Patent EP2985353	NA	coding protein	psRNATarget
JB163904.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1568 from Patent EP2559767	NA	coding protein	psRNATarget
HI403443.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1568 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235265.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1260 from Patent EP2985353	NA	coding protein	psRNATarget
HI403135.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1260 from Patent EP2074227	NA	coding protein	psRNATarget
JB163596.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||||||||||||||||||= targets:12   GGGAAUGAAGCCUGGUCCGAG   32 Target Full Sequence	1.0	Sequence 1260 from Patent EP2559767	NA	coding protein	psRNATarget
BT085130.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:795   UGGGAUGAAGCCUGGUCCGGA   815 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0298G05 mRNA, complete cds	NA	coding protein	psRNATarget
KJ727606.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:573   UGGGAUGAAGCCUGGUCCGGA   593 Target Full Sequence	2.5	Zea mays clone pUT5466 HB transcription factor (HB133) mRNA, partial cds	NA	coding protein	psRNATarget
HQ858784.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:585   UGGGAUGAAGCCUGGUCCGGA   605 Target Full Sequence	2.5	Zea mays clone UT1770 HB homeobox transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
AY501430.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:636   UGGGAUGAAGCCUGGUCCGGA   656 Target Full Sequence	2.5	Zea mays rolled leaf1 mRNA, complete cds	NA	coding protein	psRNATarget
DQ286526.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:616   UGGGAUGAAGCCUGGUCCGGA   636 Target Full Sequence	2.5	Zea mays rolled leaf 2 (rld2) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112524.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:616   UGGGAUGAAGCCUGGUCCGGA   636 Target Full Sequence	2.5	Zea mays rolled leaf 2 (rld2), mRNA	NA	coding protein	psRNATarget
BT067483.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:663   UGGGAUGAAGCCUGGUCCGGA   683 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds	NA	coding protein	psRNATarget
EU975909.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:669   UGGGAUGAAGCCUGGUCCGGA   689 Target Full Sequence	2.5	Zea mays clone 505073 mRNA sequence	NA	coding protein	psRNATarget
BT054873.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:727   UGGGAUGAAGCCUGGUCCGGA   747 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0170L18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152743.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:727   UGGGAUGAAGCCUGGUCCGGA   747 Target Full Sequence	2.5	Zea mays putative homeobox/lipid-binding domain family protein (LOC100279785), mRNA	NA	coding protein	psRNATarget
XM_020550129.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:723   UGGGAUGAAGCCUGGUCCGGA   743 Target Full Sequence	2.5	PREDICTED: Zea mays putative homeobox/lipid-binding domain family protein (LOC100279785), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666322.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:756   UGGGAUGAAGCCUGGUCCGGA   776 Target Full Sequence	2.5	PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001148922.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:814   UGGGAUGAAGCCUGGUCCGGA   834 Target Full Sequence	2.5	Zea mays Homeobox-leucine zipper protein ATHB-14 (TIDP3177), mRNA	NA	coding protein	psRNATarget
XM_008666852.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:950   UGGGAUGAAGCCUGGUCCGGA   970 Target Full Sequence	2.5	PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553176.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:985   UGGGAUGAAGCCUGGUCCGGA   1005 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274025 (IDP322), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001309221.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1040   UGGGAUGAAGCCUGGUCCGGA   1060 Target Full Sequence	2.5	Zea mays rolled leaf 1 (rld1), mRNA	NA	coding protein	psRNATarget
BT066287.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1040   UGGGAUGAAGCCUGGUCCGGA   1060 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662182.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:935   UGGGAUGAAGCCUGGUCCGGA   955 Target Full Sequence	2.5	PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553214.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1062   UGGGAUGAAGCCUGGUCCGGA   1082 Target Full Sequence	2.5	PREDICTED: Zea mays Homeobox-leucine zipper protein ATHB-14 (gpm56a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001329573.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1154   UGGGAUGAAGCCUGGUCCGGA   1174 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192627 (LOC100192627), mRNA	NA	coding protein	psRNATarget
XM_008657521.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *||=|||||||||||||||=| targets:1081   CGGGAUGAAGCCUGGUCCGGA   1101 Target Full Sequence	2.5	PREDICTED: Zea mays homeobox-leucine zipper protein HOX29 (LOC103634943), mRNA	NA	coding protein	psRNATarget
BT056134.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||*|||||||||||||||= targets:1600   GGGAUUGAAGCCUGGUCCGAG   1620 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds	NA	coding protein	psRNATarget
BT056134.2	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *|||||||=|||||||||||* targets:1868   AGGAAUGAGGCCUGGUCCGAC   1888 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153310.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   ||||*|||||||||||||||= targets:1600   GGGAUUGAAGCCUGGUCCGAG   1620 Target Full Sequence	2.0	Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA	NA	coding protein	psRNATarget
NM_001153310.1	ncRNA:21   CCCUUACUUCGGACCAGGCUU   1   *|||||||=|||||||||||* targets:1868   AGGAAUGAGGCCUGGUCCGAC   1888 Target Full Sequence	2.5	Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA	NA	coding protein	psRNATarget