Search result

BaseInfo

ncRNA ID osa-miR167c-5p
Species Oryza sativa
Class miRNA
Genome position Chr3:33130619-33130781 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 17 - UGAAGCUGCCAGCAUGAUCUA - 37
Stem-loop(if miRNA) U      ----     C      A      --             UCUGA       A      ------GU    -----     CUG
 GUCCAA    GGGAA GAGUGA GCUGCC  AGCAUGAUCUAGC     AUGAUCA CAAGAU        GCUC     CCACA   C
 ||||||    ||||| |||||| ||||||  |||||||||||||     ||||||| ||||||        ||||     |||||   C
 CGGGUU    CCCUU UUCACU CGACGG  UCGUACUGGAUCG     UACUGGU GUUCUG        CGAG     GGUGU   U
A      GUUA     C      C      CG             UUCCG       -      AUCGUUGU    UUCUA     CCU
Stem-loop sequence UGUCCAAGGGAACGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAAUGAUCAACAAGAUGUGCUCCCACACUGCCUUCCUGUGGAUCUUGAGCUGUUGCUAGUCUUGUGGUCAUGCCUUGCUAGGUCAUGCUGCGGCAGCCUCACUUCUUCCCAUUGUUGGGCA

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).