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BaseInfo

ncRNA ID	novel_zma_miR478
Species	Zea mays
Class	miRNA
Genome position	Chr7:33000443-33000491 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089714;SRR2089702;SRR2089706
Length	24
Mature sequence(if miRNA)	1 - CCCGGCACGGCACGGCACUGGCAC - 24
Stem-loop(if miRNA)	---  CG  A  -  A  -  A    C    CC  GC CG GC CG GC CUGG A    ||  || || || || || |||| C    GG  UG GC CG GC CG GACC G ACG  AU  -  A  -  A  -    A
Stem-loop sequence	CCCGGCACGGCACGGCACUGGCACGACCAGGCACGGCACGGUUAGGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU948414.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   ||-=|=|||=|||||||||||||| targets:657   GU-UCGGUGUCGUGCCGUGCCGGG   679 Target Full Sequence	2.0	Zea mays clone 374412 mRNA sequence	NA	coding protein	psRNATarget
EZ057876.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   ****||||||||||||||||||*| targets:519   UACACAGUGCCGUGCCGUGCCGUG   542 Target Full Sequence	1.5	TSA: Zea mays contig58998, mRNA sequence	NA	coding protein	psRNATarget
NM_001139237.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   ***||||||||||*|||||||||* targets:796   CGCCCAGUGCCGUCCCGUGCCGGC   819 Target Full Sequence	2.5	Zea mays putative xyloglucan endotransglucosylase/hydrolase protein 32 (si486043g09(3)), mRNA	NA	coding protein	psRNATarget
BT036663.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   ***||||||||||*|||||||||* targets:796   CGCCCAGUGCCGUCCCGUGCCGGC   819 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128G17 mRNA, complete cds	NA	coding protein	psRNATarget
EU961640.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   ***||||||||||*|||||||||* targets:798   CGCCCAGUGCCGUCCCGUGCCGGC   821 Target Full Sequence	2.5	Zea mays clone 237268 xyloglucan endotransglucosylase/hydrolase protein 32 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155526.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   ***||||||||||*|||||||||* targets:798   CGCCCAGUGCCGUCCCGUGCCGGC   821 Target Full Sequence	2.5	Zea mays xyloglucan endotransglucosylase/hydrolase protein 32 (LOC100282618), mRNA	NA	coding protein	psRNATarget
BT035865.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1147   GUGCAGCGACGCCGUGCCGUGCCGGG   1172 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0086H14 mRNA, complete cds	NA	coding protein	psRNATarget
BT088170.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1073   GUGCAGCGACGCCGUGCCGUGCCGGG   1098 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0042P05 mRNA, complete cds	NA	coding protein	psRNATarget
BT043275.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1153   GUGCAGCGACGCCGUGCCGUGCCGGG   1178 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0140C20 mRNA, complete cds	NA	coding protein	psRNATarget
EU972649.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1169   GUGCAGCGACGCCGUGCCGUGCCGGG   1194 Target Full Sequence	3.0	Zea mays clone 385183 polygalacturonase precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158414.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1169   GUGCAGCGACGCCGUGCCGUGCCGGG   1194 Target Full Sequence	3.0	Zea mays polygalacturonase (LOC100285523), mRNA	NA	coding protein	psRNATarget
BT064451.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1189   GUGCAGCGACGCCGUGCCGUGCCGGG   1214 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0169P19 mRNA, complete cds	NA	coding protein	psRNATarget
BT064418.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1231   GUGCAGCGACGCCGUGCCGUGCCGGG   1256 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0167M09 mRNA, complete cds	NA	coding protein	psRNATarget
BT064413.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1251   GUGCAGCGACGCCGUGCCGUGCCGGG   1276 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0167C11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175196.1	ncRNA:24   CACG--GUCACGGCACGGCACGGCCC   1   ||||--|=**|||||||||||||||| targets:1251   GUGCAGCGACGCCGUGCCGUGCCGGG   1276 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382455 (LOC100382455), mRNA	NA	coding protein	psRNATarget
EU956438.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   ****||||||||||||||||||*| targets:1300   UACACAGUGCCGUGCCGUGCCGUG   1323 Target Full Sequence	1.5	Zea mays clone 1563405 glucan endo-1,3-beta-glucosidase 7 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348382.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   **||=*||||||||||||||||*| targets:942   UAGCUCGUGCCGUGCCGUGCCGUG   965 Target Full Sequence	2.5	Zea mays uncharacterized LOC109617026 (LOC109617026), mRNA	NA	coding protein	psRNATarget
EU949099.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   **||=*||||||||||||||||*| targets:942   UAGCUCGUGCCGUGCCGUGCCGUG   965 Target Full Sequence	2.5	Zea mays clone 396002 mRNA sequence	NA	coding protein	psRNATarget
XM_020549086.1	ncRNA:24   CACGGUCACGGCACGGCACGGCCC   1   *|||**||||||||*||||||||| targets:1   AUGCGCGUGCCGUGGCGUGCCGGG   24 Target Full Sequence	2.5	PREDICTED: Zea mays spidroin-1-like (LOC109944353), mRNA	NA	coding protein	psRNATarget