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BaseInfo

ncRNA ID novel_zma_miR476
Species Zea mays
Class miRNA
Genome position Chr7:32100187-32100239 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089713;SRR2089715;SRR2287159;SRR2089700;SRR2089702;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length 21
Mature sequence(if miRNA) 1 - UUUGAAUGCACUAGAGCUGAU - 21
Stem-loop(if miRNA) UUUGA    --A           A U
     AUGC   CUAGAGCUGAU C A
     ||||   ||||||||||| | G
     UGCG   GAUCUCGGCUA G G
CCAAG    AGG           C G
Stem-loop sequence UUUGAAUGCACUAGAGCUGAUACUAGGGGCAUCGGCUCUAGGGAGCGUGAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163503.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:9   AUUAGCUCUAGUGCAUUCAAA   29

1.0 Sequence 1167 from Patent EP2559767 NA coding protein psRNATarget
HI403042.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:9   AUUAGCUCUAGUGCAUUCAAA   29

1.0 Sequence 1167 from Patent EP2074227 NA coding protein psRNATarget
LQ235172.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:9   AUUAGCUCUAGUGCAUUCAAA   29

1.0 Sequence 1167 from Patent EP2985353 NA coding protein psRNATarget
LQ235137.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:143   AUUAGCUCUAGUGCAUUCAAA   163

1.0 Sequence 1132 from Patent EP2985353 NA coding protein psRNATarget
HI403007.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:143   AUUAGCUCUAGUGCAUUCAAA   163

1.0 Sequence 1132 from Patent EP2074227 NA coding protein psRNATarget
JB163468.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:143   AUUAGCUCUAGUGCAUUCAAA   163

1.0 Sequence 1132 from Patent EP2559767 NA coding protein psRNATarget
HI406978.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:11   AUUAGCUCUAGUGCAUUCAAA   31

1.0 Sequence 5103 from Patent EP2074227 NA coding protein psRNATarget
JB167439.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:11   AUUAGCUCUAGUGCAUUCAAA   31

1.0 Sequence 5103 from Patent EP2559767 NA coding protein psRNATarget
LQ239108.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:11   AUUAGCUCUAGUGCAUUCAAA   31

1.0 Sequence 5103 from Patent EP2985353 NA coding protein psRNATarget
XM_020547482.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:109   AUUAGCUCUAGUGCAUUCAAA   129

1.0 PREDICTED: Zea mays adenylyl-sulfate kinase (LOC100217102), transcript variant X6, mRNA NA coding protein psRNATarget
BT067062.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:1176   AUUAGCUCUAGUGCAUUCAAA   1196

1.0 Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds NA coding protein psRNATarget
BT067062.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|*||||||||||||||||
targets:953   AUUAUCUCUAGUGCAUUCAAA   973

2.0 Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds NA coding protein psRNATarget
XM_020549505.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:433   AUUAGCUCUAGUGCAUUCAAA   453

1.0 PREDICTED: Zea mays Protein LSD1 (cl889_1), transcript variant X2, mRNA NA coding protein psRNATarget
BT036471.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:705   AUUAGCUCUAGUGCAUUCAAA   725

1.0 Zea mays full-length cDNA clone ZM_BFb0118B10 mRNA, complete cds NA coding protein psRNATarget
EU974177.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:819   AUUAGCUCUAGUGCAUUCAAA   839

1.0 Zea mays clone 442071 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001139105.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:819   AUUAGCUCUAGUGCAUUCAAA   839

1.0 Zea mays SWR1 complex subunit 6 (LOC100194045), mRNA NA coding protein psRNATarget
EU943162.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:1747   AUUAGCUCUAGUGCAUUCAAA   1767

1.0 Zea mays clone 1574300 mRNA sequence NA coding protein psRNATarget
XM_008657422.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:4209   AUUAGCUCUAGUGCAUUCAAA   4229

1.0 PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC103634832), mRNA NA coding protein psRNATarget
XM_020542354.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:4403   AUUAGCUCUAGUGCAUUCAAA   4423

1.0 PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658477.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:4403   AUUAGCUCUAGUGCAUUCAAA   4423

1.0 PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:830   AUUAGCUCUAGUGCAUUCAAA   850

1.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||||||
targets:2121   AUUAGCUCUAGUGCAUUCAAA   2141

1.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|*||||||||||||||||
targets:1277   AUUACCUCUAGUGCAUUCAAA   1297

2.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
EZ105418.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:50   AUUAGUUCUAGUGCAUUCAAA   70

2.0 TSA: Zea mays contig41075, mRNA sequence NA coding protein psRNATarget
EZ105418.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:101   AUUAGUUCUAGUGCAUUCAAA   121

2.0 TSA: Zea mays contig41075, mRNA sequence NA coding protein psRNATarget
LQ239345.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:157   AUUAGCUCUAGUGCAUUUAAA   177

2.5 Sequence 5340 from Patent EP2985353 NA coding protein psRNATarget
JB167676.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:157   AUUAGCUCUAGUGCAUUUAAA   177

2.5 Sequence 5340 from Patent EP2559767 NA coding protein psRNATarget
HI407215.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:157   AUUAGCUCUAGUGCAUUUAAA   177

2.5 Sequence 5340 from Patent EP2074227 NA coding protein psRNATarget
LQ235167.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||=|||||||||||||
targets:178   AUUAGCUUUAGUGCAUUCAAA   198

2.0 Sequence 1162 from Patent EP2985353 NA coding protein psRNATarget
JB163498.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||=|||||||||||||
targets:178   AUUAGCUUUAGUGCAUUCAAA   198

2.0 Sequence 1162 from Patent EP2559767 NA coding protein psRNATarget
HI403037.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||=|||||||||||||
targets:178   AUUAGCUUUAGUGCAUUCAAA   198

2.0 Sequence 1162 from Patent EP2074227 NA coding protein psRNATarget
BT038068.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:733   AUUAGUUCUAGUGCAUUCAAA   753

2.0 Zea mays full-length cDNA clone ZM_BFb0210C05 mRNA, complete cds NA coding protein psRNATarget
BT083782.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:1235   AUUAGCUCUAGUGCAUUUAAA   1255

2.5 Zea mays full-length cDNA clone ZM_BFb0039K15 mRNA, complete cds NA coding protein psRNATarget
NM_001143457.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:1290   AUUAGCUCUAGUGCAUUUAAA   1310

2.5 Zea mays hypothetical protein (LOC100217088), mRNA NA coding protein psRNATarget
BT037911.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:1290   AUUAGCUCUAGUGCAUUUAAA   1310

2.5 Zea mays full-length cDNA clone ZM_BFb0202I17 mRNA, complete cds NA coding protein psRNATarget
XM_008674069.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:1272   AUUAGCUCUAGUGCAUUUAAA   1292

2.5 PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X2, mRNA NA coding protein psRNATarget
BT060604.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:1518   AUUAGCUCUAGUGCAUUUAAA   1538

2.5 Zea mays full-length cDNA clone ZM_BFb0022G03 mRNA, complete cds NA coding protein psRNATarget
XM_008674068.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||||||=|||
targets:1650   AUUAGCUCUAGUGCAUUUAAA   1670

2.5 PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X1, mRNA NA coding protein psRNATarget
BT054486.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:1880   AUUAGUUCUAGUGCAUUCAAA   1900

2.0 Zea mays full-length cDNA clone ZM_BFc0087I09 mRNA, complete cds NA coding protein psRNATarget
XM_008678485.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:2972   AUUAGUUCUAGUGCAUUCAAA   2992

2.0 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008678483.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:3424   AUUAGUUCUAGUGCAUUCAAA   3444

2.0 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678484.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:3405   AUUAGUUCUAGUGCAUUCAAA   3425

2.0 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001317389.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:3426   AUUAGUUCUAGUGCAUUCAAA   3446

2.0 Zea mays Retinoblastoma-related protein 1 (LOC100217179), mRNA NA coding protein psRNATarget
XM_008678482.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:3423   AUUAGUUCUAGUGCAUUCAAA   3443

2.0 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646094.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||=|||||||||||||
targets:778   AUUAGCUUUAGUGCAUUCAAA   798

2.0 PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545827.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|||||||||||||||
targets:1076   AUUAGUUCUAGUGCAUUCAAA   1096

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020552868.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|=||||||||||||||||||
targets:475   UUUAGCUCUAGUGCAUUCAAA   495

1.0 PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552869.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|=||||||||||||||||||
targets:477   UUUAGCUCUAGUGCAUUCAAA   497

1.0 PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA NA coding protein psRNATarget
JB170015.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:174   AUUAGUUUUAGUGCAUUCAAA   194

3.0 Sequence 7679 from Patent EP2559767 NA coding protein psRNATarget
LQ241684.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:174   AUUAGUUUUAGUGCAUUCAAA   194

3.0 Sequence 7679 from Patent EP2985353 NA coding protein psRNATarget
HI409554.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:174   AUUAGUUUUAGUGCAUUCAAA   194

3.0 Sequence 7679 from Patent EP2074227 NA coding protein psRNATarget
LQ235193.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  |||||||*|||||||||||||
targets:192   AUCAGCUAUAGUGCAUUCAAA   212

1.0 Sequence 1188 from Patent EP2985353 NA coding protein psRNATarget
HI403063.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  |||||||*|||||||||||||
targets:192   AUCAGCUAUAGUGCAUUCAAA   212

1.0 Sequence 1188 from Patent EP2074227 NA coding protein psRNATarget
JB163524.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  |||||||*|||||||||||||
targets:192   AUCAGCUAUAGUGCAUUCAAA   212

1.0 Sequence 1188 from Patent EP2559767 NA coding protein psRNATarget
JB163600.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  |||||||*|||||||||||||
targets:193   AUCAGCUAUAGUGCAUUCAAA   213

1.0 Sequence 1264 from Patent EP2559767 NA coding protein psRNATarget
HI403139.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  |||||||*|||||||||||||
targets:193   AUCAGCUAUAGUGCAUUCAAA   213

1.0 Sequence 1264 from Patent EP2074227 NA coding protein psRNATarget
LQ235269.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  |||||||*|||||||||||||
targets:193   AUCAGCUAUAGUGCAUUCAAA   213

1.0 Sequence 1264 from Patent EP2985353 NA coding protein psRNATarget
EU951762.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:697   AUUAGUUYUAGUGCAUUCAAA   717

3.0 Zea mays clone 998418 mRNA sequence NA coding protein psRNATarget
BT083710.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||==|=|||||||||||||||
targets:733   AUUGGUUCUAGUGCAUUCAAA   753

3.0 Zea mays full-length cDNA clone ZM_BFb0030M14 mRNA, complete cds NA coding protein psRNATarget
NM_001177091.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||==|=|||||||||||||||
targets:733   AUUGGUUCUAGUGCAUUCAAA   753

3.0 Zea mays uncharacterized LOC100384586 (LOC100384586), mRNA NA coding protein psRNATarget
AY111966.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:219   AUUAGUUUUAGUGCAUUCAAA   239

3.0 Zea mays CL4954_1 mRNA sequence NA coding protein psRNATarget
XM_008663424.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:1103   AUUAGUUUUAGUGCAUUCAAA   1123

3.0 PREDICTED: Zea mays MED7 transcription factor (MED7.2), transcript variant X1, mRNA NA coding protein psRNATarget
BT087743.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:1134   AUUAGUUUUAGUGCAUUCAAA   1154

3.0 Zea mays full-length cDNA clone ZM_BFb0181F12 mRNA, complete cds NA coding protein psRNATarget
BT042628.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:1285   AUUAGUUUUAGUGCAUUCAAA   1305

3.0 Zea mays full-length cDNA clone ZM_BFb0383P13 mRNA, complete cds NA coding protein psRNATarget
NM_001148622.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|=|||||||||||||
targets:1285   AUUAGUUUUAGUGCAUUCAAA   1305

3.0 Zea mays MED7 transcription factor (MED7.2), mRNA NA coding protein psRNATarget
XM_008657108.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||==|=|||||||||||||||
targets:1989   AUUGGUUCUAGUGCAUUCAAA   2009

3.0 PREDICTED: Zea mays uncharacterized LOC100384586 (LOC100384586), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657107.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||==|=|||||||||||||||
targets:2037   AUUGGUUCUAGUGCAUUCAAA   2057

3.0 PREDICTED: Zea mays uncharacterized LOC100384586 (LOC100384586), transcript variant X1, mRNA NA coding protein psRNATarget
EU947961.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|*||||||||||||||||
targets:258   AUUAACUCUAGUGCAUUCAAA   278

2.0 Zea mays clone 367473 mRNA sequence NA coding protein psRNATarget
BT063644.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||||*||||||||
targets:1018   AUUAGCUCUAGUACAUUCAAA   1038

2.5 Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds NA coding protein psRNATarget
NM_001175005.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||||*||||||||
targets:1018   AUUAGCUCUAGUACAUUCAAA   1038

2.5 Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA NA coding protein psRNATarget
AF305892.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||||||||||*|||||||
targets:1890   AUUAGCUCUAGUGGAUUCAAA   1910

2.5 Zea mays microtubule-binding protein TANGLED1 mRNA, complete cds NA coding protein psRNATarget
XM_020547730.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||||*||||||||
targets:2183   AUUAGCUCUAGUACAUUCAAA   2203

2.5 PREDICTED: Zea mays uncharacterized LOC100282506 (pco067337), transcript variant X1, mRNA NA coding protein psRNATarget
BT063004.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||*||||||||||
targets:2322   AUUAGCUCUAAUGCAUUCAAA   2342

2.5 Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds NA coding protein psRNATarget
NM_001152524.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||*||||||||||
targets:2322   AUUAGCUCUAAUGCAUUCAAA   2342

2.5 Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA NA coding protein psRNATarget
XM_020537567.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||*|||||||||||||||
targets:1252   AUUAGGUCUAGUGCAUUCAAA   1272

2.0 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537567.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|**|||||||||||||||
targets:1132   AUUAUGUCUAGUGCAUUCAAA   1152

3.0 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547655.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||*||||||||||
targets:2003   AUUAGCUCUAAUGCAUUCAAA   2023

2.5 PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008669570.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||*||||||||||
targets:2047   AUUAGCUCUAAUGCAUUCAAA   2067

2.5 PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008669572.2
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||*||||||||||
targets:2257   AUUAGCUCUAAUGCAUUCAAA   2277

2.5 PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548642.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=|||||||*||||||||||
targets:2293   AUUAGCUCUAAUGCAUUCAAA   2313

2.5 PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA NA coding protein psRNATarget
JB169053.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:181   AUUAGUUAUAGUGCAUUCAAA   201

3.0 Sequence 6717 from Patent EP2559767 NA coding protein psRNATarget
LQ240722.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:181   AUUAGUUAUAGUGCAUUCAAA   201

3.0 Sequence 6717 from Patent EP2985353 NA coding protein psRNATarget
HI408592.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:181   AUUAGUUAUAGUGCAUUCAAA   201

3.0 Sequence 6717 from Patent EP2074227 NA coding protein psRNATarget
LQ235100.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:176   AUUAGUUAUAGUGCAUUCAAA   196

3.0 Sequence 1095 from Patent EP2985353 NA coding protein psRNATarget
HI402970.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:176   AUUAGUUAUAGUGCAUUCAAA   196

3.0 Sequence 1095 from Patent EP2074227 NA coding protein psRNATarget
JB163431.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:176   AUUAGUUAUAGUGCAUUCAAA   196

3.0 Sequence 1095 from Patent EP2559767 NA coding protein psRNATarget
LQ235160.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:187   AUUAGUUAUAGUGCAUUCAAA   207

3.0 Sequence 1155 from Patent EP2985353 NA coding protein psRNATarget
JB163491.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:187   AUUAGUUAUAGUGCAUUCAAA   207

3.0 Sequence 1155 from Patent EP2559767 NA coding protein psRNATarget
HI403030.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  ||=||=|*|||||||||||||
targets:187   AUUAGUUAUAGUGCAUUCAAA   207

3.0 Sequence 1155 from Patent EP2074227 NA coding protein psRNATarget
EU945766.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  =|=|*||||||||||||||||
targets:366   GUUAACUCUAGUGCAUUCAAA   386

2.0 Zea mays clone 285090 mRNA sequence NA coding protein psRNATarget
BT040655.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|=|||*||||||||||||||
targets:1240   UUUAGCACUAGUGCAUUCAAA   1260

2.0 Zea mays full-length cDNA clone ZM_BFc0110I03 mRNA, complete cds NA coding protein psRNATarget
EU962311.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|=|||*||||||||||||||
targets:1245   UUUAGCACUAGUGCAUUCAAA   1265

2.0 Zea mays clone 241715 cytosolic 5-nucleotidase III mRNA, complete cds NA coding protein psRNATarget
NM_001156991.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|=|||*||||||||||||||
targets:1252   UUUAGCACUAGUGCAUUCAAA   1272

2.0 Zea mays uncharacterized LOC100284093 (pco072227), mRNA NA coding protein psRNATarget
EU967075.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|=|||*||||||||||||||
targets:1252   UUUAGCACUAGUGCAUUCAAA   1272

2.0 Zea mays clone 299314 cytosolic 5-nucleotidase III mRNA, complete cds NA coding protein psRNATarget
HI402965.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  =|=||=|*|||||||||||||
targets:5   GUUAGUUAUAGUGCAUUCAAA   25

3.0 Sequence 1090 from Patent EP2074227 NA coding protein psRNATarget
JB163426.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  =|=||=|*|||||||||||||
targets:5   GUUAGUUAUAGUGCAUUCAAA   25

3.0 Sequence 1090 from Patent EP2559767 NA coding protein psRNATarget
LQ235095.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  =|=||=|*|||||||||||||
targets:5   GUUAGUUAUAGUGCAUUCAAA   25

3.0 Sequence 1090 from Patent EP2985353 NA coding protein psRNATarget
XM_020538570.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  =*=||||||||||||||*|||
targets:2464   GCUAGCUCUAGUGCAUUGAAA   2484

2.5 PREDICTED: Zea mays mucin-1-like (LOC109939971), mRNA NA coding protein psRNATarget
EZ085246.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|*=|||*|||||||||||||
targets:18   CUAGGCUAUAGUGCAUUCAAA   38

3.0 TSA: Zea mays contig20890, mRNA sequence NA coding protein psRNATarget
BT016897.1
ncRNA:21   UAGUCGAGAUCACGUAAGUUU   1
  *|*=|||*|||||||||||||
targets:275   CUAGGCUAUAGUGCAUUCAAA   295

3.0 Zea mays clone Contig730 mRNA sequence NA coding protein psRNATarget
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