Search result

BaseInfo

ncRNA ID	osa-miR6248
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:32572985-32573087 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UAUUUGAGGAUGGAGGUAGUA - 31
Stem-loop(if miRNA)	GA   AA  C              C            AC           A   UAA  UG UACUACCUCUAUCC CAAAUAUAAGGG  UUUGCCUAUGU A   |||  || |||||||||||||| ||||||||||||  |||||||||||   AUU  AC AUGAUGGAGGUAGG GUUUAUAUUCCU  AAACGGAUACA U GG   CG  U              A            -A           U
Stem-loop sequence	GAUAAAAUGCUACUACCUCUAUCCCCAAAUAUAAGGGACUUUGCCUAUGUAAUUACAUAGGCAAAAUCCUUAUAUUUGAGGAUGGAGGUAGUAUCAGCUUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288960.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   |||||||||||||||*||||| targets:193   UACUACCUCCAUCCUAAAAUA   213 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090084F05, full insert sequence	NA	coding protein	psRNATarget
XM_015778768.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   *|||*|||||||=|||||||| targets:1578   CACUCCCUCCAUUCUCAAAUA   1598 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cis-zeatin O-glucosyltransferase 1 (LOC4336630), mRNA	cis-zeatin O-glucosyltransferase 1(LOC4336630)	coding protein	psRNATarget
HI403976.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   ||||*||||||||||*||||| targets:225   UACUCCCUCCAUCCUAAAAUA   245 Target Full Sequence	2.5	Sequence 2101 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236106.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   ||||*||||||||||*||||| targets:225   UACUCCCUCCAUCCUAAAAUA   245 Target Full Sequence	2.5	Sequence 2101 from Patent EP2985353	NA	coding protein	psRNATarget
JB164437.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   ||||*||||||||||*||||| targets:225   UACUCCCUCCAUCCUAAAAUA   245 Target Full Sequence	2.5	Sequence 2101 from Patent EP2559767	NA	coding protein	psRNATarget
AK073238.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   ||||*||||||||||*||||| targets:1974   UACUCCCUCCAUCCUAAAAUA   1994 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033015M03, full insert sequence	NA	coding protein	psRNATarget
XM_015761246.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   ||||*||||||||||*||||| targets:2008   UACUCCCUCCAUCCUAAAAUA   2028 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 72A14 (LOC4323921), mRNA	cytochrome P450 72A14(LOC4323921)	coding protein	psRNATarget
AK288309.1	ncRNA:21   AUGAUGGAGGUAGGAGUUUAU   1   ||||*||||||||||*||||| targets:136   UACUCCCUCCAUCCUAAAAUA   156 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22585409 "Novel miRNAs in the control of arsenite levels in rice"; Liu Q; Funct Integr Genomics. 12:649-658(2012).