Search result

BaseInfo

ncRNA ID	novel_zma_miR466
Species	Zea mays
Class	miRNA
Genome position	Chr4:68759678-68759750 [+]
Reference genome	RefGen_v4
Source	SRR1583943;SRR1583944;SRR2647343;SRR2647385;SRR2647386;SRR2647388;SRR2647389;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - GUGGAUCUAAUCCAGAGAGGGAUU - 24
Stem-loop(if miRNA)	--GU     U     -A   A           UAUCC     GGAUC AAUCC  GAG GGGAUUGAGUG     C     ||||| |||||  ||| |||||||||||     U     CCUAG UUGGG  UUC CCCUAACUCAC     U UUCC     U     GG   -           UUUCC
Stem-loop sequence	GUGGAUCUAAUCCAGAGAGGGAUUGAGUGUAUCCCUUCCUUUCACUCAAUCCCCUUGGGGGUUUGAUCCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945457.1	ncRNA:24   UUAGGGAGAGACCUAAUCUAGGUG   1   ||||||||*||||||||||||||| targets:244   AAUCCCUCCCUGGAUUAGAUCCAC   267 Target Full Sequence	1.0	Zea mays clone 273811 mRNA sequence	NA	coding protein	psRNATarget
XM_020538427.1	ncRNA:24   UUAGGGAGAGACCUAAUCUAGGUG   1   ||||||||*=|||||||||||||| targets:5996   AAUCCCUCCUUGGAUUAGAUCCAC   6019 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103626597 (LOC103626597), mRNA	NA	coding protein	psRNATarget
EU944692.1	ncRNA:24   UUAGGGAGAGACCUAAUCUAGGUG   1   *||=|||=|*|||||||||||||* targets:177   UAUUCCUUUGUGGAUUAGAUCCAG   200 Target Full Sequence	3.0	Zea mays clone 226450 mRNA sequence	NA	coding protein	psRNATarget
EZ072294.1	ncRNA:24   UUAGGGAGAGACCUAAUCUAGGUG   1   *=***|||||||||*||||||||= targets:89   CGAGGCUCUCUGGAAUAGAUCCAU   112 Target Full Sequence	2.5	TSA: Zea mays contig07931, mRNA sequence	NA	coding protein	psRNATarget