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BaseInfo

ncRNA ID novel_zma_miR463
Species Zea mays
Class miRNA
Genome position Chr7:106548154-106548270 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089699
Length 24
Mature sequence(if miRNA) 1 - AAAAGGAAUAAAAUGAAGAGACUA - 24
Stem-loop(if miRNA) --   C  AG          A    A  UCCA    UA                   C
  GUC CU  AUUUUAUUCC UUUU GU    AAAU  CUAAAUAUAGAAACUAAAA U
  ||| ||  |||||||||| |||| ||    ||||  ||||||||||||||||||| U
  CAG GA  UAAAAUAAGG AAAA CA    UUUA  GAUUUAUAUCUUUGAUUUU U
AU   A  AG          A    A  UAUA    GC                   A
Stem-loop sequence GUCCCUAGAUUUUAUUCCAUUUUAGUUCCAAAAUUACUAAAUAUAGAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCGAUUUAUAUACAAAAAAGGAAUAAAAUGAAGAGACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008656457.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:1671   UAGUCCCUUCAUUUUAUUCCUUUU   1694

1.0 PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA NA coding protein psRNATarget
EU956227.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:1268   UAGUCCCUUCAUUUUAUUCCUUUU   1291

1.0 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:1181   UAGUCCCUUCAUUUUAUUCCUUUU   1204

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:1175   UAGUCCCUUCAUUUUAUUCCUUUU   1198

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:1172   UAGUCCCUUCAUUUUAUUCCUUUU   1195

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:1163   UAGUCCCUUCAUUUUAUUCCUUUU   1186

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
EU942443.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:491   UAGUCCCUUCAUUUUAUUCCUUUU   514

1.0 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
LQ239351.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:8   UAGUCCCUUCAUUUUAUUCCUUUU   31

1.0 Sequence 5346 from Patent EP2985353 NA coding protein psRNATarget
JB167682.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:8   UAGUCCCUUCAUUUUAUUCCUUUU   31

1.0 Sequence 5346 from Patent EP2559767 NA coding protein psRNATarget
HI407221.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||||||||||||
targets:8   UAGUCCCUUCAUUUUAUUCCUUUU   31

1.0 Sequence 5346 from Patent EP2074227 NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||||=||||
targets:946   UAGUCCCUUCAUUUUAUUCUUUUU   969

2.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
JB163522.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*=||=||||||||||||||
targets:28   UAGUCCUUUUAUUUUAUUCCUUUU   51

3.0 Sequence 1186 from Patent EP2559767 NA coding protein psRNATarget
LQ235191.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*=||=||||||||||||||
targets:28   UAGUCCUUUUAUUUUAUUCCUUUU   51

3.0 Sequence 1186 from Patent EP2985353 NA coding protein psRNATarget
HI403061.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*=||=||||||||||||||
targets:28   UAGUCCUUUUAUUUUAUUCCUUUU   51

3.0 Sequence 1186 from Patent EP2074227 NA coding protein psRNATarget
BT083492.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*||||||||*|||||||||
targets:675   UAGUCCCUUCAUUUCAUUCCUUUU   698

2.5 Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds NA coding protein psRNATarget
EU965238.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||||*||||
targets:1190   UAGUCCCUUCAUUUUAUUCAUUUU   1213

2.5 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
NM_001156492.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||||*||||
targets:1190   UAGUCCCUUCAUUUUAUUCAUUUU   1213

2.5 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
LQ235174.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||*||||||
targets:28   UAGUCCCUUCAUUUUAUACCUUUU   51

2.5 Sequence 1169 from Patent EP2985353 NA coding protein psRNATarget
JB163505.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||*||||||
targets:28   UAGUCCCUUCAUUUUAUACCUUUU   51

2.5 Sequence 1169 from Patent EP2559767 NA coding protein psRNATarget
HI403044.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||*||||||
targets:28   UAGUCCCUUCAUUUUAUACCUUUU   51

2.5 Sequence 1169 from Patent EP2074227 NA coding protein psRNATarget
LQ239470.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||||*||||
targets:8   UAGUCCCUUCAUUUUAUUCAUUUU   31

2.5 Sequence 5465 from Patent EP2985353 NA coding protein psRNATarget
HI407340.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||||*||||
targets:8   UAGUCCCUUCAUUUUAUUCAUUUU   31

2.5 Sequence 5465 from Patent EP2074227 NA coding protein psRNATarget
JB167801.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |||||*|||||||||||||*||||
targets:8   UAGUCCCUUCAUUUUAUUCAUUUU   31

2.5 Sequence 5465 from Patent EP2559767 NA coding protein psRNATarget
XM_008676145.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  |=|||*|||||||||||||*||||
targets:856   UGGUCCCUUCAUUUUAUUCAUUUU   879

2.5 PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA NA coding protein psRNATarget
EU961662.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  *=|||*|||==|||||||||||||
targets:1390   CGGUCCCUUUGUUUUAUUCCUUUU   1413

3.0 Zea mays clone 237393 mRNA sequence NA coding protein psRNATarget
BT041692.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  ***|||||*||||||||||=||||
targets:579   CCAUCUCUCCAUUUUAUUCUUUUU   602

2.5 Zea mays full-length cDNA clone ZM_BFb0031O18 mRNA, complete cds NA coding protein psRNATarget
BT055140.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGAAAA   1
  ***|||||*||||||||||=||||
targets:752   CCAUCUCUCCAUUUUAUUCUUUUU   775

2.5 Zea mays full-length cDNA clone ZM_BFc0171P20 mRNA, complete cds NA coding protein psRNATarget
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