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BaseInfo

ncRNA ID novel_zma_miR460
Species Zea mays
Class miRNA
Genome position Chr7:114375728-114375788 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089712;SRR2089713;SRR2089715;SRR2287161;SRR2287162;SRR2287165;SRR3385575;SRR3385651;SRR3385660;SRR4237220;SRR4237226;SRR5105963;SRR2089701;SRR2089704
Length 20
Mature sequence(if miRNA) 42 - AGCCAAGGAUGACUUGCCGG - 61
Stem-loop(if miRNA) --    AA               AUUA  U
  AGCC  GGAUGACUUGCCGGC    UA U
  ||||  |||||||||||||||    || U
  UCGG  UCUACUGAACGGCCG    GU C
CA    GG               CCCG  U
Stem-loop sequence AGCCAAGGAUGACUUGCCGGCAUUAUAUUUCUUGGCCCGCCGGCAAGUCAUCUGGGGCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548143.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  ||||||||||||||||||||
targets:767   CCGGCAAGUCAUCCUUGGCU   786

0.0 PREDICTED: Zea mays uncharacterized LOC103648407 (LOC103648407), mRNA NA coding protein psRNATarget
BT060668.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  ||||||||||||||||||||
targets:1023   CCGGCAAGUCAUCCUUGGCU   1042

0.0 Zea mays full-length cDNA clone ZM_BFb0031E01 mRNA, complete cds NA coding protein psRNATarget
NM_001152615.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*||||||||||||||||||
targets:545   CAGGCAAGUCAUCCUUGGCU   564

1.0 Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA NA coding protein psRNATarget
BT054579.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*||||||||||||||||||
targets:545   CAGGCAAGUCAUCCUUGGCU   564

1.0 Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds NA coding protein psRNATarget
BT062831.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  =*||||||||||||||||||
targets:304   UAGGCAAGUCAUCCUUGGCU   323

1.0 Zea mays full-length cDNA clone ZM_BFb0354L14 mRNA, complete cds NA coding protein psRNATarget
BT068645.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  =*||||||||||||||||||
targets:932   UAGGCAAGUCAUCCUUGGCU   951

1.0 Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds NA coding protein psRNATarget
NM_001176546.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  =*||||||||||||||||||
targets:932   UAGGCAAGUCAUCCUUGGCU   951

1.0 Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA NA coding protein psRNATarget
EZ065371.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:22   CUGGCAACUCAUCCUUGGCU   41

2.5 TSA: Zea mays contig01004, mRNA sequence NA coding protein psRNATarget
EU944188.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:183   CUGGCAACUCAUCCUUGGCU   202

2.5 Zea mays clone 1711451 mRNA sequence NA coding protein psRNATarget
BT062100.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:882   CUGGCAACUCAUCCUUGGCU   901

2.5 Zea mays full-length cDNA clone ZM_BFb0214I24 mRNA, complete cds NA coding protein psRNATarget
BT054250.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:933   CUGGCAACUCAUCCUUGGCU   952

2.5 Zea mays full-length cDNA clone ZM_BFb0198B09 mRNA, complete cds NA coding protein psRNATarget
XM_008666328.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:939   CUGGCAACUCAUCCUUGGCU   958

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X10, mRNA NA coding protein psRNATarget
BT016638.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:939   CUGGCAACUCAUCCUUGGCU   958

2.5 Zea mays clone Contig471 mRNA sequence NA coding protein psRNATarget
EU967250.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:949   CUGGCAACUCAUCCUUGGCU   968

2.5 Zea mays clone 300715 nuclear transcription factor Y subunit A-3 mRNA, complete cds NA coding protein psRNATarget
XM_008666311.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:965   CUGGCAACUCAUCCUUGGCU   984

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X2, mRNA NA coding protein psRNATarget
EU953946.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:939   CUGGCAACUCAUCCUUGGCU   958

2.5 Zea mays clone 1450156 mRNA sequence NA coding protein psRNATarget
BT038953.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:988   CUGGCAACUCAUCCUUGGCU   1007

2.5 Zea mays full-length cDNA clone ZM_BFb0345D16 mRNA, complete cds NA coding protein psRNATarget
XM_020546592.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:982   CUGGCAACUCAUCCUUGGCU   1001

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X1, mRNA NA coding protein psRNATarget
AY109469.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:939   CUGGCAACUCAUCCUUGGCU   958

2.5 Zea mays CL724_1 mRNA sequence NA coding protein psRNATarget
XM_008666319.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1009   CUGGCAACUCAUCCUUGGCU   1028

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008666323.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1013   CUGGCAACUCAUCCUUGGCU   1032

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020546597.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1026   CUGGCAACUCAUCCUUGGCU   1045

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546608.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1030   CUGGCAACUCAUCCUUGGCU   1049

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X7, mRNA NA coding protein psRNATarget
NM_001139400.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1303   CUGGCAACUCAUCCUUGGCU   1322

2.5 Zea mays NF-YA1 (umc1568), mRNA NA coding protein psRNATarget
BT036893.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1303   CUGGCAACUCAUCCUUGGCU   1322

2.5 Zea mays full-length cDNA clone ZM_BFb0146J08 mRNA, complete cds NA coding protein psRNATarget
BT069779.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1307   CUGGCAACUCAUCCUUGGCU   1326

2.5 Zea mays full-length cDNA clone ZM_BFb0282K22 mRNA, complete cds NA coding protein psRNATarget
XM_020546602.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1662   CUGGCAACUCAUCCUUGGCU   1681

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546611.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1666   CUGGCAACUCAUCCUUGGCU   1685

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020546607.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=|||||*||||||||||||
targets:1877   CUGGCAACUCAUCCUUGGCU   1896

2.5 PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X6, mRNA NA coding protein psRNATarget
JB166267.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  =*||||||||||=|||||||
targets:123   UAGGCAAGUCAUUCUUGGCU   142

2.5 Sequence 3931 from Patent EP2559767 NA coding protein psRNATarget
HI405806.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  =*||||||||||=|||||||
targets:123   UAGGCAAGUCAUUCUUGGCU   142

2.5 Sequence 3931 from Patent EP2074227 NA coding protein psRNATarget
LQ237936.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  =*||||||||||=|||||||
targets:123   UAGGCAAGUCAUUCUUGGCU   142

2.5 Sequence 3931 from Patent EP2985353 NA coding protein psRNATarget
EU950981.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:481   GUGGCAAUUCAUCCUUGGCU   500

2.5 Zea mays clone 677229 mRNA sequence NA coding protein psRNATarget
EU954616.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1123   GUGGCAACUCAUCCUUGGCU   1142

2.5 Zea mays clone 1474061 nuclear transcription factor Y subunit A-3 mRNA, complete cds NA coding protein psRNATarget
EU964705.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1126   GUGGCAACUCAUCCUUGGCU   1145

2.5 Zea mays clone 280955 nuclear transcription factor Y subunit A-3 mRNA, complete cds NA coding protein psRNATarget
BT036648.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1031   GUGGCAACUCAUCCUUGGCU   1050

2.5 Zea mays full-length cDNA clone ZM_BFb0127N08 mRNA, complete cds NA coding protein psRNATarget
BT066403.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1093   GUGGCAACUCAUCCUUGGCU   1112

2.5 Zea mays full-length cDNA clone ZM_BFc0117G04 mRNA, complete cds NA coding protein psRNATarget
BT038709.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1111   GUGGCAACUCAUCCUUGGCU   1130

2.5 Zea mays full-length cDNA clone ZM_BFb0310L05 mRNA, complete cds NA coding protein psRNATarget
BT018371.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1112   GUGGCAACUCAUCCUUGGCU   1131

2.5 Zea mays clone EL01N0306C05.d mRNA sequence NA coding protein psRNATarget
BT018548.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1118   GUGGCAACUCAUCCUUGGCU   1137

2.5 Zea mays clone EL01N0438E07.d mRNA sequence NA coding protein psRNATarget
EU954602.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1255   GUGGCAACUCAUCCUUGGCU   1274

2.5 Zea mays clone 1472867 nuclear transcription factor Y subunit A-3 mRNA, complete cds NA coding protein psRNATarget
NM_001153839.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1255   GUGGCAACUCAUCCUUGGCU   1274

2.5 Zea mays nuclear transcription factor Y subunit A-3 (LOC100280919), mRNA NA coding protein psRNATarget
XM_008669055.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1123   GUGGCAACUCAUCCUUGGCU   1142

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008669054.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1135   GUGGCAACUCAUCCUUGGCU   1154

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008669052.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1173   GUGGCAACUCAUCCUUGGCU   1192

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008669050.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1185   GUGGCAACUCAUCCUUGGCU   1204

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X1, mRNA NA coding protein psRNATarget
AY109487.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1134   GUGGCAACUCAUCCUUGGCU   1153

2.5 Zea mays CL795_1 mRNA sequence NA coding protein psRNATarget
EU962352.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1443   GUGGCAACUCAUCCUUGGCU   1462

2.5 Zea mays clone 241983 nuclear transcription factor Y subunit A-3 mRNA, complete cds NA coding protein psRNATarget
NM_001139229.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1443   GUGGCAACUCAUCCUUGGCU   1462

2.5 Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), mRNA NA coding protein psRNATarget
EU961865.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1423   GUGGCAAUUCAUCCUUGGCU   1442

2.5 Zea mays clone 238735 mRNA sequence NA coding protein psRNATarget
XM_008653171.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1271   GUGGCAACUCAUCCUUGGCU   1290

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100280919), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546405.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1583   GUGGCAAUUCAUCCUUGGCU   1602

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-7-like (LOC103644713), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669053.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1495   GUGGCAACUCAUCCUUGGCU   1514

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008669051.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1507   GUGGCAACUCAUCCUUGGCU   1526

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008653172.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:1771   GUGGCAACUCAUCCUUGGCU   1790

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100280919), transcript variant X2, mRNA NA coding protein psRNATarget
BT062487.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  *=|||||*||||||||||||
targets:2077   GUGGCAACUCAUCCUUGGCU   2096

2.5 Zea mays full-length cDNA clone ZM_BFb0304C09 mRNA, complete cds NA coding protein psRNATarget
XM_008645464.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:813   CAGGCAAUUCAUCCUUGGCU   832

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008645463.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:914   CAGGCAAUUCAUCCUUGGCU   933

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008645461.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:936   CAGGCAAUUCAUCCUUGGCU   955

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008645462.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:946   CAGGCAAUUCAUCCUUGGCU   965

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X5, mRNA NA coding protein psRNATarget
AY110887.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:983   CAGGCAAUUCAUCCUUGGCU   1002

2.5 Zea mays CL807_1 mRNA sequence NA coding protein psRNATarget
BT017464.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:979   CAGGCAAUUCAUCCUUGGCU   998

2.5 Zea mays clone EL01N0407G01.c mRNA sequence NA coding protein psRNATarget
XM_008645460.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:996   CAGGCAAUUCAUCCUUGGCU   1015

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008645459.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:1000   CAGGCAAUUCAUCCUUGGCU   1019

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645458.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:1013   CAGGCAAUUCAUCCUUGGCU   1032

2.5 PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X1, mRNA NA coding protein psRNATarget
EU961977.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:1007   CAGGCAAUUCAUCCUUGGCU   1026

2.5 Zea mays clone 239433 nuclear transcription factor Y subunit A-3 mRNA, complete cds NA coding protein psRNATarget
NM_001155603.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |*|||||*||||||||||||
targets:1007   CAGGCAAUUCAUCCUUGGCU   1026

2.5 Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), mRNA NA coding protein psRNATarget
EU950969.1
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=*||*||||||||||||||
targets:814   CUAGCUAGUCAUCCUUGGCU   833

3.0 Zea mays clone 677139 mRNA sequence NA coding protein psRNATarget
XM_008676965.2
ncRNA:20   GGCCGUUCAGUAGGAACCGA   1
  |=*||*||||||||||||||
targets:1072   CUAGCUAGUCAUCCUUGGCU   1091

3.0 PREDICTED: Zea mays myb-related protein Myb4 (LOC103651344), mRNA NA coding protein psRNATarget
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