ncRNA ID | osa-miR5497 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:32506012-32506149 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - CAGAAUAUCUGGGACGAGCAU - 31 |
Stem-loop(if miRNA) |
AAUUG       ---      C     C   CA  ---A    --- U  GCACAGUAUAGCUCGGACUUGUU      UUGCCCA   GAAUAU UGGGA GAG  UG    UAAC   A GU                       A      |||||||   |||||| ||||| |||  ||    ||||   | ||                       A      GAUGGGU   UUUGUA AUCUU CUC  AC    UUAC   C CG                       U CGAUA       UCU      U     -   AC  ACUC    CUU -  UAACCCUCUCGGUUGUAAUCCUC |
Stem-loop sequence | AAUUGUUGCCCAGAAUAUCUGGGACGAGCAUGAUAACAUGUGCACAGUAUAGCUCGGACUUGUUAAUCUCCUAAUGUUGGCUCUCCCAAUGCCUUCCAUUCUCACACACUCUUCUAUAUGUUUUCUUGGGUAGAUAGC |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |