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BaseInfo

ncRNA ID osa-miR5497
Species Oryza sativa
Class miRNA
Genome position Chr3:32506012-32506149 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - CAGAAUAUCUGGGACGAGCAU - 31
Stem-loop(if miRNA) AAUUG       ---      C     C   CA  ---A    --- U  GCACAGUAUAGCUCGGACUUGUU
     UUGCCCA   GAAUAU UGGGA GAG  UG    UAAC   A GU                       A
     |||||||   |||||| ||||| |||  ||    ||||   | ||                       A
     GAUGGGU   UUUGUA AUCUU CUC  AC    UUAC   C CG                       U
CGAUA       UCU      U     -   AC  ACUC    CUU -  UAACCCUCUCGGUUGUAAUCCUC
Stem-loop sequence AAUUGUUGCCCAGAAUAUCUGGGACGAGCAUGAUAACAUGUGCACAGUAUAGCUCGGACUUGUUAAUCUCCUAAUGUUGGCUCUCCCAAUGCCUUCCAUUCUCACACACUCUUCUAUAUGUUUUCUUGGGUAGAUAGC

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).