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BaseInfo

ncRNA ID	novel_zma_miR458
Species	Zea mays
Class	miRNA
Genome position	Chr7:117922908-117923006 [-]
Reference genome	RefGen_v4
Source	SRR2089709
Length	23
Mature sequence(if miRNA)	77 - AUGAGUAAGCUGCUGGAGAUAGU - 99
Stem-loop(if miRNA)	--    G    CU      -   -AGUCUUA      -----    --AA   CC   AUGA UAAG  GCUGGA GAU        UGGGAA     AGAA    UGA  A   |||| ||||  |||||| |||        ||||||     ||||    |||   UACU AUUC  CGAUUU CUA        ACUCUU     UCUU    ACU  A UC    G    --      U   CUUUACCG      AAGUA    ACUA   CA
Stem-loop sequence	AUGAGUAAGCUGCUGGAGAUAGUCUUAUGGGAAAGAAAAUGACCAAACUCAAUCAUUCUAUGAAUUCUCAGCCAUUUCAUCUUUUAGCCUUAGUCAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018734.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =|||||||||||||||||||||| targets:493   GCUAUCUCCAGCAGCUUACUCAU   515 Target Full Sequence	0.0	Zea mays clone EL01N0520C05.d mRNA sequence	NA	coding protein	psRNATarget
XM_020547039.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =|||||||||||||||||||||| targets:2815   GCUAUCUCCAGCAGCUUACUCAU   2837 Target Full Sequence	0.0	PREDICTED: Zea mays elongation factor 2 (LOC103644298), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667506.2	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =|||||||||||||||||||||| targets:2850   GCUAUCUCCAGCAGCUUACUCAU   2872 Target Full Sequence	0.0	PREDICTED: Zea mays elongation factor 2 (LOC103644298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||||||||=|||||||||||||| targets:833   ACUAUCUCUAGCAGCUUACUCAU   855 Target Full Sequence	1.0	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT033245.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   *|||||||||||||||||||||| targets:573   UCUAUCUCCAGCAGCUUACUCAU   595 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0123I13 mRNA, complete cds	NA	coding protein	psRNATarget
EU944463.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |=||||||||||||||||=|||| targets:287   AUUAUCUCCAGCAGCUUAUUCAU   309 Target Full Sequence	1.5	Zea mays clone 219466 mRNA sequence	NA	coding protein	psRNATarget
EU963199.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |=||||||||||||||||=|||| targets:1473   AUUAUCUCCAGCAGCUUAUUCAU   1495 Target Full Sequence	1.5	Zea mays clone 258960 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150313.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |=||||||||||||||||=|||| targets:1473   AUUAUCUCCAGCAGCUUAUUCAU   1495 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100276552), mRNA	NA	coding protein	psRNATarget
HI408998.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:10   ACUAUCUCCAGCAGCUUACCCAU   32 Target Full Sequence	1.5	Sequence 7123 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241128.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:10   ACUAUCUCCAGCAGCUUACCCAU   32 Target Full Sequence	1.5	Sequence 7123 from Patent EP2985353	NA	coding protein	psRNATarget
JB169459.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:10   ACUAUCUCCAGCAGCUUACCCAU   32 Target Full Sequence	1.5	Sequence 7123 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020551739.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:589   ACUAUCUCCAGCAGCUUACCCAU   611 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100533130 (LOC100533130), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066073.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:466   ACUAUCUCCAGCAGCUUACCCAU   488 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0227L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175737.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:466   ACUAUCUCCAGCAGCUUACCCAU   488 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383061 (LOC100383061), mRNA	NA	coding protein	psRNATarget
XM_020545170.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:518   ACUAUCUCCAGCAGCUUACCCAU   540 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383061 (LOC100383061), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545171.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:577   ACUAUCUCCAGCAGCUUACCCAU   599 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383061 (LOC100383061), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545172.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |||||||||||||||||||*||| targets:774   ACUAUCUCCAGCAGCUUACCCAU   796 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383061 (LOC100383061), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547703.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||||||||||||||*|||||||| targets:1266   ACUAUCUCCAGCAGAUUACUCAU   1288 Target Full Sequence	1.5	PREDICTED: Zea mays TPR domain containing protein (LOC100281311), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008669692.2	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||||||||||||||*|||||||| targets:2306   ACUAUCUCCAGCAGAUUACUCAU   2328 Target Full Sequence	1.5	PREDICTED: Zea mays TPR domain containing protein (LOC100281311), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT067977.1	ncRNA:23   UGAUAGAGGUCGUCG-AAUGAGUA   1   =||||||||||||||-|||||||| targets:1114   GCUAUCUCCAGCAGCCUUACUCAU   1137 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0013K06 mRNA, complete cds	NA	coding protein	psRNATarget
EU948276.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =||||||||||||||||||*||| targets:154   GCUAUCUCCAGCAGCUUACCCAU   176 Target Full Sequence	1.5	Zea mays clone 372216 mRNA sequence	NA	coding protein	psRNATarget
XM_020540964.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =||||||||||||*||||||||| targets:1160   GCUAUCUCCAGCAUCUUACUCAU   1182 Target Full Sequence	1.5	PREDICTED: Zea mays elongation factor 2-like (LOC103632697), mRNA	NA	coding protein	psRNATarget
BT034278.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||||||||=||||*||||||||| targets:2132   ACUAUCUCUAGCAACUUACUCAU   2154 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0028C09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137427.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||||||||=||||*||||||||| targets:2132   ACUAUCUCUAGCAACUUACUCAU   2154 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192003 (LOC100192003), mRNA	NA	coding protein	psRNATarget
BT038504.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |=|||*||||||||||||=|||| targets:680   AUUAUGUCCAGCAGCUUAUUCAU   702 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0280P03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165427.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |=|||*||||||||||||=|||| targets:1453   AUUAUGUCCAGCAGCUUAUUCAU   1475 Target Full Sequence	2.5	Zea mays uncharacterized LOC100303793 (LOC100303793), mRNA	NA	coding protein	psRNATarget
BT039656.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |=|||*||||||||||||=|||| targets:1453   AUUAUGUCCAGCAGCUUAUUCAU   1475 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0037G03 mRNA, complete cds	NA	coding protein	psRNATarget
AY103663.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |=|||*||||||||||||=|||| targets:1523   AUUAUGUCCAGCAGCUUAUUCAU   1545 Target Full Sequence	2.5	Zea mays PCO090448 mRNA sequence	NA	coding protein	psRNATarget
XM_020544905.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =|||||||=||||||||||*||| targets:3610   GCUAUCUCUAGCAGCUUACCCAU   3632 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100216781 (LOC100216781), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT033208.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||-|||||=|||||||||=|||| targets:1531   AC-AUCUCUAGCAGCUUAUUCAU   1552 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176F08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136615.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||-|||||=|||||||||=|||| targets:1531   AC-AUCUCUAGCAGCUUAUUCAU   1552 Target Full Sequence	2.5	Zea mays putative RING zinc finger domain superfamily protein (LOC100191180), mRNA	NA	coding protein	psRNATarget
NM_001143612.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =||=|||=|||||||||||*||| targets:659   GCUGUCUUCAGCAGCUUACCCAU   681 Target Full Sequence	2.5	Zea mays uncharacterized LOC100217258 (LOC100217258), mRNA	NA	coding protein	psRNATarget
BT038220.1	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   =||=|||=|||||||||||*||| targets:659   GCUGUCUUCAGCAGCUUACCCAU   681 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0218B15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652546.2	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   ||-|||||=|||||||||=|||| targets:1590   AC-AUCUCUAGCAGCUUAUUCAU   1611 Target Full Sequence	2.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100191180), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT041702.2	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |**|*|||||||||||||||||| targets:1501   AGAACCUCCAGCAGCUUACUCAU   1523 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0034I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148132.2	ncRNA:23   UGAUAGAGGUCGUCGAAUGAGUA   1   |**|*|||||||||||||||||| targets:1501   AGAACCUCCAGCAGCUUACUCAU   1523 Target Full Sequence	1.0	Zea mays uncharacterized LOC100273722 (LOC100273722), mRNA	NA	coding protein	psRNATarget