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BaseInfo

ncRNA ID novel_zma_miR457
Species Zea mays
Class miRNA
Genome position Chr7:127573771-127573836 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089706
Length 24
Mature sequence(if miRNA) 1 - UUAGCGACAACUAAAACGAAACGG - 24
Stem-loop(if miRNA) --A    U                     U  A
   UUUC UUUUAGUUGUCGCUGGAUAGU CA U
   |||| ||||||||||||||||||||| ||
   AAAG AAAAUCAACAGCGAUUUAUCA GU U
GGC    C                     C  U
Stem-loop sequence AUUUCUUUUUAGUUGUCGCUGGAUAGUUCAAUUUUGCACUAUUUAGCGACAACUAAAACGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238250.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||=|
targets:4   CCGUUUCGUUUUAGUUGUCGCUGA   27

1.5 Sequence 4245 from Patent EP2985353 NA coding protein psRNATarget
HI406120.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||=|
targets:4   CCGUUUCGUUUUAGUUGUCGCUGA   27

1.5 Sequence 4245 from Patent EP2074227 NA coding protein psRNATarget
JB166581.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||=|
targets:4   CCGUUUCGUUUUAGUUGUCGCUGA   27

1.5 Sequence 4245 from Patent EP2559767 NA coding protein psRNATarget
XM_008667486.2
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||=|
targets:1341   CCGUUUCGUUUUAGUUGUCGCUGA   1364

1.5 PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA NA coding protein psRNATarget
JB169695.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:11   CCGUUUCGUUUUAGUUGUCGCUGG   34

2.5 Sequence 7359 from Patent EP2559767 NA coding protein psRNATarget
HI409234.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:11   CCGUUUCGUUUUAGUUGUCGCUGG   34

2.5 Sequence 7359 from Patent EP2074227 NA coding protein psRNATarget
LQ241364.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:11   CCGUUUCGUUUUAGUUGUCGCUGG   34

2.5 Sequence 7359 from Patent EP2985353 NA coding protein psRNATarget
HI407269.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5394 from Patent EP2074227 NA coding protein psRNATarget
JB167730.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5394 from Patent EP2559767 NA coding protein psRNATarget
LQ239399.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5394 from Patent EP2985353 NA coding protein psRNATarget
LQ239341.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5336 from Patent EP2985353 NA coding protein psRNATarget
HI407211.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5336 from Patent EP2074227 NA coding protein psRNATarget
LQ239454.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5449 from Patent EP2985353 NA coding protein psRNATarget
HI407324.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5449 from Patent EP2074227 NA coding protein psRNATarget
JB167672.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5336 from Patent EP2559767 NA coding protein psRNATarget
JB167785.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5449 from Patent EP2559767 NA coding protein psRNATarget
LQ239435.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5430 from Patent EP2985353 NA coding protein psRNATarget
HI407230.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5355 from Patent EP2074227 NA coding protein psRNATarget
LQ239360.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5355 from Patent EP2985353 NA coding protein psRNATarget
HI407305.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5430 from Patent EP2074227 NA coding protein psRNATarget
JB167691.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5355 from Patent EP2559767 NA coding protein psRNATarget
JB167766.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:14   CCGUUUCGUUUUAGUUGUCGCUGG   37

2.5 Sequence 5430 from Patent EP2559767 NA coding protein psRNATarget
EZ065373.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:286   CCGUUUCGUUUUAGUUGUCGCUGG   309

2.5 TSA: Zea mays contig01006, mRNA sequence NA coding protein psRNATarget
BT062468.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:579   CCGUUUCGUUUUAGUUGUCGCUGG   602

2.5 Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds NA coding protein psRNATarget
BT055583.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:843   CCGUUUCGUUUUAGUUGUCGCUGG   866

2.5 Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds NA coding protein psRNATarget
NM_001153043.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:843   CCGUUUCGUUUUAGUUGUCGCUGG   866

2.5 Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA NA coding protein psRNATarget
EU968044.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1032   CCGUUUCGUUUUAGUUGUCGCUGG   1055

2.5 Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds NA coding protein psRNATarget
BT035546.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:920   CCGUUUCGUUUUAGUUGUCGCUGG   943

2.5 Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds NA coding protein psRNATarget
EU945792.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1186   CCGUUUCGUUUUAGUUGUCGCUGG   1209

2.5 Zea mays clone 285684 mRNA sequence NA coding protein psRNATarget
EU971616.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1170   CCGUUUCGUUUUAGUUGUCGCUGG   1193

2.5 Zea mays clone 368130 rieske domain containing protein mRNA, complete cds NA coding protein psRNATarget
EU964554.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1335   CCGUUUCGUUUUAGUUGUCGCUGG   1358

2.5 Zea mays clone 279840 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020549872.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1273   CCGUUUCGUUUUAGUUGUCGCUGG   1296

2.5 PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001175582.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1440   CCGUUUCGUUUUAGUUGUCGCUGG   1463

2.5 Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA NA coding protein psRNATarget
BT065656.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1440   CCGUUUCGUUUUAGUUGUCGCUGG   1463

2.5 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds NA coding protein psRNATarget
EU964807.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1523   CCGUUUCGUUUUAGUUGUCGCUGG   1546

2.5 Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds NA coding protein psRNATarget
NM_001156357.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:1523   CCGUUUCGUUUUAGUUGUCGCUGG   1546

2.5 Zea mays Acetylornithine deacetylase (pco121857a), mRNA NA coding protein psRNATarget
EU971439.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:2121   CCGUUUCGUUUUAGUUGUCGCUGG   2144

2.5 Zea mays clone 364738 cyclin-like F-box mRNA, complete cds NA coding protein psRNATarget
NM_001158152.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||||||||||||||||||||||==
targets:2121   CCGUUUCGUUUUAGUUGUCGCUGG   2144

2.5 Zea mays cyclin-like F-box (LOC100285258), mRNA NA coding protein psRNATarget
LQ242181.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  =|||||||||||||||||||||==
targets:9   UCGUUUCGUUUUAGUUGUCGCUGG   32

2.5 Sequence 8176 from Patent EP2985353 NA coding protein psRNATarget
HI410051.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  =|||||||||||||||||||||==
targets:9   UCGUUUCGUUUUAGUUGUCGCUGG   32

2.5 Sequence 8176 from Patent EP2074227 NA coding protein psRNATarget
JB170512.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  =|||||||||||||||||||||==
targets:9   UCGUUUCGUUUUAGUUGUCGCUGG   32

2.5 Sequence 8176 from Patent EP2559767 NA coding protein psRNATarget
XM_020551485.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  |=||||||||||||||||||||==
targets:2536   CUGUUUCGUUUUAGUUGUCGCUGG   2559

2.5 PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA NA coding protein psRNATarget
EU957363.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  |=|||||*|||||||||||||||=
targets:475   CUGUUUCUUUUUAGUUGUCGCUAG   498

2.0 Zea mays clone 1589847 mRNA sequence NA coding protein psRNATarget
JB166319.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||*||||*|||||||||||||||=
targets:16   CCAUUUCUUUUUAGUUGUCGCUAG   39

2.0 Sequence 3983 from Patent EP2559767 NA coding protein psRNATarget
LQ237988.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||*||||*|||||||||||||||=
targets:16   CCAUUUCUUUUUAGUUGUCGCUAG   39

2.0 Sequence 3983 from Patent EP2985353 NA coding protein psRNATarget
HI405858.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||*||||*|||||||||||||||=
targets:16   CCAUUUCUUUUUAGUUGUCGCUAG   39

2.0 Sequence 3983 from Patent EP2074227 NA coding protein psRNATarget
NM_001305845.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  ||*||||*|||||||||||||||=
targets:2228   CCAUUUCUUUUUAGUUGUCGCUAG   2251

2.0 Zea mays uncharacterized LOC542022 (LOC542022), mRNA NA coding protein psRNATarget
JB166836.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  |=*||||*|||||||||||||||=
targets:3   CUAUUUCUUUUUAGUUGUCGCUAG   26

2.0 Sequence 4500 from Patent EP2559767 NA coding protein psRNATarget
HI406375.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  |=*||||*|||||||||||||||=
targets:3   CUAUUUCUUUUUAGUUGUCGCUAG   26

2.0 Sequence 4500 from Patent EP2074227 NA coding protein psRNATarget
LQ238505.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  |=*||||*|||||||||||||||=
targets:3   CUAUUUCUUUUUAGUUGUCGCUAG   26

2.0 Sequence 4500 from Patent EP2985353 NA coding protein psRNATarget
EU952581.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  |=*||||*|||||||||||||||=
targets:469   CUAUUUCUUUUUAGUUGUCGCUAG   492

2.0 Zea mays clone 1283791 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149050.1
ncRNA:24   GGCAAAGCAAAAUCAACAGCGAUU   1
  |=*||||*|||||||||||||||=
targets:469   CUAUUUCUUUUUAGUUGUCGCUAG   492

2.0 Zea mays hypothetical protein (LOC100274760), mRNA NA coding protein psRNATarget
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