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BaseInfo

ncRNA ID novel_zma_miR452
Species Zea mays
Class miRNA
Genome position Chr7:148222111-148222185 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089703;SRR2089704;SRR2089705
Length 24
Mature sequence(if miRNA) 1 - AAGGGCGGACUGUCCGCGGCCUAG - 24
Stem-loop(if miRNA) -G     --           GG   G    -   -    G
  GGGCC  GGACGGUCCGC  CCU GUGC GAG GCGC G
  |||||  |||||||||||  ||| |||| ||| ||||
  UCCGG  CCUGUCAGGCG  GGA CGCG CUC CGUG U
GA     CG           --   A    U   U    G
Stem-loop sequence GGGGCCGGACGGUCCGCGGCCUGGUGCGAGGCGCGGUGGUGCUCUCUGCGCAAGGGCGGACUGUCCGCGGCCUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001196968.1
ncRNA:24   GA-UCCGGCGCCUGUCAGGCGGGAA   1
  ||-||||||||||||||||||||*|
targets:1264   CUCAGGCCGCGGACAGUCCGCCCCU   1288

1.5 Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA NA coding protein psRNATarget
BT088349.1
ncRNA:24   GA-UCCGGCGCCUGUCAGGCGGGAA   1
  ||-||||||||||||||||||||*|
targets:1264   CUCAGGCCGCGGACAGUCCGCCCCU   1288

1.5 Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds NA coding protein psRNATarget
XM_020539115.1
ncRNA:24   GAUCCGGCGCCUGUCAGGCGGGAA   1
  |*||||||||||||||||||||*|
targets:2708   CCAGGCCGCGGACAGUCCGCCCCU   2731

1.5 PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA NA coding protein psRNATarget