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BaseInfo

ncRNA ID novel_zma_miR451
Species Zea mays
Class miRNA
Genome position Chr1:147319108-147319272 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089714;SRR2089699
Length 24
Mature sequence(if miRNA) 1 - GAGACGGCCGUAGGAAGUUAGCAU - 24
Stem-loop(if miRNA) --   AC                    CA              C  -CCUC  C            -U    G   -  -    C
  GAG  GGCCGUAGGAAGUUAGCAUG  CAGCUAACUUCCUA GA     CU UAGGAAGUUAGC  UUCA UUG CU CAUC G
  |||  ||||||||||||||||||||  |||||||||||||| ||     || ||||||||||||  |||| ||| || ||||
  CUC  CCGGCAUCCUUCAAUCGUAC  GUCGAUUGAAGGAU CU     GG GUUCUUCAAUCG  GAGU AAC GG GUGG U
AU   CU                    AC              -  CCGCC  C            CC    A   U  C    G
Stem-loop sequence GAGACGGCCGUAGGAAGUUAGCAUGCACAGCUAACUUCCUACGACCUCCUCUAGGAAGUUAGCUUUCAGUUGCUCAUCCGUGGGUGCGGUCAAAUGAGCCGCUAACUUCUUGCGGCCGCCUCUAGGAAGUUAGCUGCACAUGCUAACUUCCUACGGCCUCCUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   UACGAUUGAAGGAUGCCGGCAGAG   1
  *|||||||||=|||||*|||||||
targets:1251   CUGCUAACUUUCUACGACCGUCUC   1274

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget